Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01526 ATGGCGCTGTTCCTGCTCTACGAATCCGCTTCGGGCTATGCCCTGTTCGAGGCTCACGGTCTCGACGAAATCGGCCAGAACACCGAAGCGGTTCGGAACTCCGTTTCGGACCTAAACAGGTTCGGCAAAGTCGTTAAGCTTCGCTCCTTCAACCCTTTTACCTCCGCTCTCGATGCTCTCAAACAGTGCAACGCTGTCTCCGAAGGCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACCAACTTGCCTAAAGTGAAGGAAGGTAAGAAGTCCAAGTTCAGTTTAGGTGTGTCTGATCCTAAGATTGGATCGCAGATATCTGAAGTGACTAAGATTCCTTGCCAAAGTAATGAGTTTGTGAGTGAGCTTCTTCGCGGTGTGCGATTCCATTTTGATACGTTTGTCGGTGATCTCAAGTCTGGAGATTTGGAAAAGGCACAACTTGGTCTGGGGCATAGTTACAGCAGAGCGAAGGTGAAGTTTAATGTTAATCGTGTGGATAACATGGTTATTCAAGCTATCTTCCTTCTTGATACACTTGACAAGGACATCAATTCGTTCTCCATGAGAGTCAGAGAGTGGTATTCATGGCATTTTCCTGAGCTGGTGAAAATTGTAAATGATAATTATCTGTATGCCAAAGTTGCAAAATTTATTGAGGATAAGGCAAAGTTGTCTGAAGACAAGATTCCAGGCTTAACTGACATAGTTGGAGATGAAGATAAAGCAAAGGAGATTGTGGAAGCTGCCAAAGCCTCCATGGGACAGGATTTGTCCCCAGTGGACTTGATCAATGTCCAGCAATTTGCACAGAGGGTAATGAACCTATCTGAGTACAGAAAGAACTTATATGATTACCTGGTTGCTAAAATGAATGATATTGCACCAAATTTGGCCTCTTTAATTGGTGAAGTTGTTGGTGCTCGTTTGATTTCCCATGCTGGTAGCCTCACAAATTTAGCTAAGTGCCCCTCTTCAACTCTTCAAATTCTTGGTGCAGAGAAGGCTTTGTTCAGGGCATTAAAAACAAGAGGAAACACTCCCAAATATGGCTTGATATTCCACTCTTCTTTTATTGGTCGGGCATCTGCGAAAAATAAGGGCAGAATGGCTCGTTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTGAAAGGGGTACTACTGTTTTTGGGGAGAAACTCTGTGAGCAAGTTGAGGAAAGACTTGACTTTTATGACAAGGGAGTTGCCCCTCGCAAGAACATCGATGTCATGCAGTCTGCTATTGAAAGTGCTGAAAACAAAGATACAGAGATGGAAACAGAAGCACCTGTCGAAGTTTCTGGCAAGAAAACCAAAAAGAAGAAACAAAAAGCTGCTGCTGCTGAAGGCGATGACATGGCTGTAGATAAGCCTACAGAAGTTACAAATGGTGATGCTGTGGAGGATCAGAAATCAGAGAAGAAGAAGAAAAAGAAAGAAAAGAGGAAATTGGAACAGGAGATGGAGGTTGATGATCAGGCTGAAGATGATGGTGCCAATGGGGTCACAAGTGAGCAAGATGGAACAGCTAAAAAGAAGAAGAATAAAAAGGATAGTAATGGAGAAGTATTGGAGGCTGCTGAAGAGTCTAAGAAGAAGAAAAAGAAATCAAAAAAGAAGGATACCGAGTAA 1671 0.4297 MALFLLYESASGYALFEAHGLDEIGQNTEAVRNSVSDLNRFGKVVKLRSFNPFTSALDALKQCNAVSEGILTDELRTVLETNLPKVKEGKKSKFSLGVSDPKIGSQISEVTKIPCQSNEFVSELLRGVRFHFDTFVGDLKSGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYAKVAKFIEDKAKLSEDKIPGLTDIVGDEDKAKEIVEAAKASMGQDLSPVDLINVQQFAQRVMNLSEYRKNLYDYLVAKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASAKNKGRMARYLANKCSIASRIDCFSERGTTVFGEKLCEQVEERLDFYDKGVAPRKNIDVMQSAIESAENKDTEMETEAPVEVSGKKTKKKKQKAAAAEGDDMAVDKPTEVTNGDAVEDQKSEKKKKKKEKRKLEQEMEVDDQAEDDGANGVTSEQDGTAKKKKNKKDSNGEVLEAAEESKKKKKKSKKKDTE 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01526 556 SMART NOSIC_2 170 222 IPR012976 -
Pumo4g01526 556 Gene3D - 140 298 - -
Pumo4g01526 556 MobiDBLite consensus disorder prediction 432 449 - -
Pumo4g01526 556 FunFam Nucleolar protein 56 299 411 - -
Pumo4g01526 556 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 3 550 IPR045056 GO:0030515|GO:0031428|GO:0032040
Pumo4g01526 556 MobiDBLite consensus disorder prediction 430 556 - -
Pumo4g01526 556 MobiDBLite consensus disorder prediction 520 545 - -
Pumo4g01526 556 Pfam snoRNA binding domain, fibrillarin 177 409 IPR002687 -
Pumo4g01526 556 FunFam Nucleolar protein 56 140 298 - -
Pumo4g01526 556 Coils Coil 421 441 - -
Pumo4g01526 556 Pfam NOP5NT (NUC127) domain 4 69 IPR012974 -
Pumo4g01526 556 Gene3D Nop domain 299 422 IPR042239 -
Pumo4g01526 556 Coils Coil 537 556 - -
Pumo4g01526 556 MobiDBLite consensus disorder prediction 457 502 - -
Pumo4g01526 556 SUPERFAMILY Nop domain 163 412 IPR036070 -
Pumo4g01526 556 Coils Coil 480 510 - -
Pumo4g01526 556 ProSiteProfiles Nop domain profile. 295 413 IPR002687 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01526 Pumo-Chr4 19173555 19176840 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01526 K14564 - gmx:100794470 976.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01526 4 19173555 19176840 Pumo4g01526 4 19173555 19176840 ECH