Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1483 ATGGCGCTGTTCCTGCTCTACGAATCCGCTTCCGGCTACGCCCTGTTCGAGGCTCACGGCCTCGACGAAATCGGTCAGAACACGGAAGCGGTTCGGAACTCCGTTTCGGAGCTGAACAGGTTCGGCAAAGTCGTTAAGCTTCGGTCCTTCAATCCTTTCACCTCCGCTCTCGATGCCCTCAAACAGTGTAACGCCGTCTCCGAAGGCATATTAACTGATGAGCTAAGGACTGTTTTGGAGACTAACTTGCCTAAAGTGAAGGAAGGTAAGAAGTCCAAGTTCAGTTTGGGTGTGTCCGATCCTAAGATTGGTTCGCAGATATCTGAAGTGACTAAGATTCCTTGCCAAAGTAATGAGTTTGTTAGTGAACTTCTTCGTGGTGTGCGATTCCATTTTGATAGGTTTGTCAGTGATCTCAAGTCTGGAGATTTGGAAAAGGCACAACTTGGTCTGGGGCATAGTTACAGCAGAGCGAAGgtgaaatttaatgttaatcGAGTTGACAATATGGTTATTCAAGCTATCTTCCTTCTTGATACACTTGATAAGGATATCAATTCGTTCTCCATGAGAGTCAGAGAGTGGTATTCATGGCATTTTCCTGAGCTGGTGAAAATTGTTAACGATAATTATCTTTATGCCAAAGTTGCAAAATTTATTGAGGATAAGGCAAAGTTGTCTGAAGACAAGATTCCAGACTTAACTGACATAGTTGGAGATGAGGATAAAGCAAAGGAGATTGTGGAAGCTGCCAAGGCCTCCATGGGACAGGATTTGTCCCCAGTGGACTTGATCAATGTCCAGCAATTTGCACACAGGGTAATGGACCTCTCGGAGTACAGGAAAAACCTGTATGATTACCTGGTTGCTAAAATGAATGATATTGCACCAAATTTGGCCTCTTTaattggtgaagttgttggtgctcGTTTGATTTCCCATGCTGGTAGCCTCACAAATTTAGCCAAGTGCCCCTCGTCAACTCTTCAAATTCTTGGTGCCGAGAAGGCTTTGTTCAGAGCATTAAAAACAAGAGGAAACACTCCCAAGTATGGTCTGATATTCCACTCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGCCGAATGGCTCGTTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTGAAAGGGGTACTACTGTTTTTGGGGAGAAACTCCGTGAGCAAGTTGAGGAACGGCTTGACTTTTACGACAAGGGAGTTGCCCCTCGTAAGAACATAGATGTCATGCAGTCAGCTATTGAAAGTGCTGAAAACAAAGATACAGAGATGGAAACAGAAACGCCTGTTGAAGTTTCAGGCAAGAAAgccaaaaagaagaaacaaaaagctGCAGCTGCTGATGAAGGCGATGACATGGCTGTAGAAGTTACAAATGATGATGCTGTGGAGGATCATAAatcagagaaaaagaaaaagaaagaaaagaggaaattgGAACAGGAGATGCAGCTTCACTATCAGACTGAAGATGATGGTGCCAATGGGGTCGCAAGTGAGCAAGATGGAACagttaaaagaagaagaataaaaaggataataatGGAGAAGCATTGGAGGCTGCTGATGAGtctaagaagaagaaaaagaaatcaaaaaagaaGGATACCGAGTAAACAATGA 1665 0.4042 MALFLLYESASGYALFEAHGLDEIGQNTEAVRNSVSELNRFGKVVKLRSFNPFTSALDALKQCNAVSEGILTDELRTVLETNLPKVKEGKKSKFSLGVSDPKIGSQISEVTKIPCQSNEFVSELLRGVRFHFDRFVSDLKSGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYAKVAKFIEDKAKLSEDKIPDLTDIVGDEDKAKEIVEAAKASMGQDLSPVDLINVQQFAHRVMDLSEYRKNLYDYLVAKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASAKNKGRMARYLANKCSIASRIDCFSERGTTVFGEKLREQVEERLDFYDKGVAPRKNIDVMQSAIESAENKDTEMETETPVEVSGKKAKKKKQKAAAADEGDDMAVEVTNDDAVEDHKSEKKKKKEKRKLEQEMQLHYQTEDDGANGVASEQDGTVKRRRIKRIIMEKHWRLLMSLRRRKRNQKRRIPSKQ 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1483 554 MobiDBLite consensus disorder prediction 473 493 - -
Ssu6g1483 554 MobiDBLite consensus disorder prediction 432 449 - -
Ssu6g1483 554 PANTHER BNACNNG34340D PROTEIN 1 526 - -
Ssu6g1483 554 Gene3D Nop domain 299 422 IPR042239 -
Ssu6g1483 554 Pfam snoRNA binding domain, fibrillarin 177 409 IPR002687 -
Ssu6g1483 554 SMART NOSIC_2 170 222 IPR012976 -
Ssu6g1483 554 Coils Coil 477 497 - -
Ssu6g1483 554 Coils Coil 421 441 - -
Ssu6g1483 554 Pfam NOP5NT (NUC127) domain 4 69 IPR012974 -
Ssu6g1483 554 ProSiteProfiles Nop domain profile. 295 413 IPR002687 -
Ssu6g1483 554 SUPERFAMILY Nop domain 163 412 IPR036070 -
Ssu6g1483 554 MobiDBLite consensus disorder prediction 500 519 - -
Ssu6g1483 554 MobiDBLite consensus disorder prediction 429 493 - -
Ssu6g1483 554 Gene3D - 140 298 - -
Ssu6g1483 554 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 1 526 IPR045056 GO:0030515|GO:0031428|GO:0032040
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1483 Ssu-Chr6 24351336 24354394 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1483 K14564 - gmx:100794470 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1483 6 24351336 24354394 Ssu6g1483 6 24351336 24354394 ECH