Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2759 ATGGCTATGGCTCTCTTTCTTCTCTATGAAACCGCTGCTGGTTATGCTTTGTTTGAAGTCCATGGAATCGATGAAATCGGTCAGAACACCGAAGCTGTTCGGAATTCCGTTACCGATATGAACAGGTTCGGTAAAGTTGTTAAGCTTCGCTCTTTCAATCCTTTTACCTCTGCTCTTGAAGGTCTTGAACAAATCAACGCCGTTTCTGAAGGGATTATGACCGATGAGCTGAGGACTGTTTTGGAGACTAACTTACCTAAAGTAAAGGAAGGGAAGAAGCCAAAGTTCACCTTAGGTGTATTAGAATCTAAGATTGGTTCGCATATACATGAAGCTACAAAGATTCCAGTCCAAAGTAACGACTTTGTTGGCGAACTTATTCGTGGTATCAGGCAACATTTTGAAAAGTTCGTTGGTGATCTCAAGCCAGGAGATTTTGAAAAGGCACAACTTGGTCTGGGCCATAGTTACAGCAGAGCTAAGGTGAAATTCAATGTTAATCGGGTTGACAATATGGTCATTCAAGCAATCTTCCTTCTCGATACACTTGATAAGGATATCAATTCATTTGCCATGAGAGTCAGAGAGTGGTATTCATGGCATTTTCCTGAGCTAGTGAAGATTGTAAATGATAATTATTTGTATTGCAAAATTGCAAAATTTATTGAAGATAAGTCAAAGTTGGCTGAAGACAAGATTGAAGCCTTGACCGACTTAGTTGGAGATGAAGATAAAGCAAAGGAGATTGTAGAAGCTGCCAAAGCCTCCATGGGTCAGGATTTGTCCCCTGTGGATTTGATCAATGTCCATCAGTTTGCCCAAAGGGTGATGGACTTATCTGATTACAGAAGAAGGTTGTCTGATTACCTCACTGCTAAAATGAATGATATTGCACCAAATTTGCAATCTTTAGTTGGTGACAGTGTTGGTGCTCGTTTAATTTCCCATGCTGGTAGTCTCACTAATTTAGCTAAGTGCCCCTCCTCAACTCTTCAAATTCTTGGTGCAGAGAAGGCTTTGTTCAGGGCATTAAAAACAAGAGGAAACACTCCCAAGTATGGTCTGATATTCCACTCTTCTTTTATTGGTCGTGCATCTGCCAAAAACAAGGGCCGAATGGCTCGCTATCTTGCAAACAAATGCTCAATTGCATCACGAATTGACTGCTTTTCTGAAAAGGGTACTTCAGCATTTGGGGATAAACTCCGTGAGCAAGTTGAGGAGCGACTTGACTTTTATGACAAGGGAGTTGCCCCTCGTAAGAACATTGATGTCATGAAATCTGCTATCGAAAGTGCTGATAATAATGATACAGAAATGCAAACAGAGGAAGTTTCAGCTAAGAAAACCAAGAAGAGGAAGCAAAAAGCTACGGAAGATGACATGGCTGTAGATAAGGCTGAAGAAACTACAAATGGTGATGTGGAGCATAAGTCAGAGAAGAAGAAAAAGAAGAAAGAAAAGAGAAAATTGGACCAGGAGGTGGAAGTTCAGGAACAGGTTGTAGATGATGGTGCCAATGGGGAATCAGGCAAGAAGAAGAAAAAGAAATCCAAAAGAAAGGATACTGAATGA 1575 0.4076 MAMALFLLYETAAGYALFEVHGIDEIGQNTEAVRNSVTDMNRFGKVVKLRSFNPFTSALEGLEQINAVSEGIMTDELRTVLETNLPKVKEGKKPKFTLGVLESKIGSHIHEATKIPVQSNDFVGELIRGIRQHFEKFVGDLKPGDFEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFAMRVREWYSWHFPELVKIVNDNYLYCKIAKFIEDKSKLAEDKIEALTDLVGDEDKAKEIVEAAKASMGQDLSPVDLINVHQFAQRVMDLSDYRRRLSDYLTAKMNDIAPNLQSLVGDSVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASAKNKGRMARYLANKCSIASRIDCFSEKGTSAFGDKLREQVEERLDFYDKGVAPRKNIDVMKSAIESADNNDTEMQTEEVSAKKTKKRKQKATEDDMAVDKAEETTNGDVEHKSEKKKKKKEKRKLDQEVEVQEQVVDDGANGESGKKKKKKSKRKDTE* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2759 524 ProSiteProfiles Nop domain profile. 297 415 IPR002687 -
Tpr5g2759 524 Pfam snoRNA binding domain, fibrillarin 179 411 IPR002687 -
Tpr5g2759 524 Coils Coil 219 239 - -
Tpr5g2759 524 Coils Coil 481 501 - -
Tpr5g2759 524 MobiDBLite consensus disorder prediction 441 497 - -
Tpr5g2759 524 Gene3D Nop domain 301 427 IPR042239 -
Tpr5g2759 524 SUPERFAMILY Nop domain 165 414 IPR036070 -
Tpr5g2759 524 MobiDBLite consensus disorder prediction 432 524 - -
Tpr5g2759 524 Gene3D - 143 300 - -
Tpr5g2759 524 PANTHER NOP56-LIKE PRE RNA PROCESSING RIBONUCLEOPROTEIN 3 523 - -
Tpr5g2759 524 Pfam NOP5NT (NUC127) domain 6 71 IPR012974 -
Tpr5g2759 524 SMART NOSIC_2 172 224 IPR012976 -
Tpr5g2759 524 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 3 523 IPR045056 GO:0030515|GO:0031428|GO:0032040
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2759 Tpr-Chr5 49713054 49716283 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2759 K14564 - gmx:100815506 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2759 5 49713054 49716283 Tpr5g2759 5 49713054 49716283 ECH