Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02270 ATGGCTCTCTTCCTCCTCCACGAAACCGCCGCCGGCTACGCCTTGTTCGAGGCTCATGGAATCGACGAAATTGGACAGAACACTGAAGCTGTTCGGAACTCCGTTTCCGATTTGACCAGGTTCGGTAAGGTCGTTAAGCTTCGCTCTTTCAACCCCTTCACCTCTGCTCTTGAAGGACTTGAACAAATTAATGCCGTCTCTGAAGGTATTATGACTGATGAACTGAGAACTGTTTTGGAGACTAGTTTACCCAAAGTAAAGGAAGGTAAAAAACCAAAGTTCTCTTTGGGTGTAGCTGAATCTAAGATTGGTTCACATATACAAGATGCTACTAAAATTCCTTGCCAAAGTAATGAGTTTGTCAATGAACTTATTCGTGGTGTCAGGCTTCATTTTGACAAGTTTGTTGGTGATCTCAAGCCAGGAGATTTGGAAAAGGCACAACTTGGTCTCTGCCACAGTTACAGCAGAGCAAAAGTGAAGTTCAATGTTAATCGGGTTGACAATATGGTCATCCAAGCAATCTTCCTACTCGATACACTTGATAAGGATATCAATTCATTTGCCATGAGAGTCAGAGAATGGTATTCATGGCATTTTCCTGAACTAGTGAAGATTGTTAATGATAATTATCTCTATTGCAAAGTAGCAAAATATGTTGAGGATAAGTCAAAGTTGGCCGAAGACAATATTGAAGCCTTAACTGACTTAGTCGGAGATGAAGATAAAGCAAAGGAGATTGTAGAAGCAGCAAAAGCCTCCATGGGTCAAGAATTGTCCCCTGTGGACTTGATCAATGTCCATCAGTTTGCTCAAAGGGTGATGGACCTATCTGACTACAGGAGAAGGTTGTCTGATTACCTAACGACTAAGATGAATGATATTGCACCAAATTTGCAATCTTTAGTTGGTGATAGTGTTGGAGCTCGTTTAATTTCTCATGCTGGTAGTCTCACAAATTTAGCTAAGTGCCCGTCATCAACTCTTCAGATTCTTGGGGCAGAGAAAGCTTTGTTCAGGGCATTAAAAACAAGAGGAAATACTCCCAAATATGGTCTGATATTCCACTCTTCTTTTATTGGTCGAGCATCTGCCAAAAACAAGGGTCGCATGGCTCGCTACCTTGCAAACAAATGCTCTATTGCATCTAGGATTGACTGCTTTTCTGAAAAGGGTACTTCAGCATTTGGGGACAAACTCCGTGAGCAAGTTGAGGAGCGACTTGACTTTTATGATAAGGGAGTTGCCCCTCGTAAGAACATTGATGTCATGAAATCTGCTATTGAAGTTGCTGACAACCTAGATACAGAAATGGAAACAGAGGAAGTATCAGCCAAGAAAACTAAGAAGAAGAAGCAGAAAGCTGCTGCAGATGAAGAAGCTGCAGAAACAACAAATGGTGATAAGTCAGAAAAGAAGAAGAAAAAGAAAGAAAAGAGAAAATTGGAGCAAGAGGCTGATGTTCAGGATCAGGTTGTAGATGAATCTGCCAATGGCGAGTCAGGAAAGAAGAAGAAGAAGAAGTCAAAGAGGAAGGATGTTGATTAA 1548 0.4134 MALFLLHETAAGYALFEAHGIDEIGQNTEAVRNSVSDLTRFGKVVKLRSFNPFTSALEGLEQINAVSEGIMTDELRTVLETSLPKVKEGKKPKFSLGVAESKIGSHIQDATKIPCQSNEFVNELIRGVRLHFDKFVGDLKPGDLEKAQLGLCHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFAMRVREWYSWHFPELVKIVNDNYLYCKVAKYVEDKSKLAEDNIEALTDLVGDEDKAKEIVEAAKASMGQELSPVDLINVHQFAQRVMDLSDYRRRLSDYLTTKMNDIAPNLQSLVGDSVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASAKNKGRMARYLANKCSIASRIDCFSEKGTSAFGDKLREQVEERLDFYDKGVAPRKNIDVMKSAIEVADNLDTEMETEEVSAKKTKKKKQKAAADEEAAETTNGDKSEKKKKKKEKRKLEQEADVQDQVVDESANGESGKKKKKKSKRKDVD 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02270 515 Gene3D - 141 298 - -
Vivi1g02270 515 FunFam Nucleolar protein 56 299 411 - -
Vivi1g02270 515 Coils Coil 431 451 - -
Vivi1g02270 515 Pfam NOP5NT (NUC127) domain 4 69 IPR012974 -
Vivi1g02270 515 SUPERFAMILY Nop domain 163 412 IPR036070 -
Vivi1g02270 515 SMART NOSIC_2 170 222 IPR012976 -
Vivi1g02270 515 Coils Coil 465 492 - -
Vivi1g02270 515 FunFam Nucleolar protein 56 140 298 - -
Vivi1g02270 515 ProSiteProfiles Nop domain profile. 295 413 IPR002687 -
Vivi1g02270 515 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 3 509 IPR045056 GO:0030515|GO:0031428|GO:0032040
Vivi1g02270 515 MobiDBLite consensus disorder prediction 436 515 - -
Vivi1g02270 515 Gene3D Nop domain 299 423 IPR042239 -
Vivi1g02270 515 MobiDBLite consensus disorder prediction 439 488 - -
Vivi1g02270 515 Pfam snoRNA binding domain, fibrillarin 177 409 IPR002687 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02270 Vivi-Chr1 47942947 47945963 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02270 K14564 - gmx:100815506 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02270 1 47942947 47945963 Vivi1g02270 1 47942947 47945963 ECH