Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03125 ATGGCTCTCTTCCTCCTCCACGAAACCGCCGCTGGCTACGCCTTGTTCGAGGCTCATGGAATCGACGAAATCGGTCAGAACACTGAAGCTGTTCGGAACTCCGTTTCCGATTTGACCAGGTTCGGTAAGGTTGTCAAGCTTCGCTCTTTCAACCCTTTCACTTCTGCTCTTGAAGGACTCGAACAAATTAATGCCGTCTCTGAAGGTATTATGACTGATGAGCTGAGAACTGTTTTGGAGACTAGCTTACCTAAAGTGAAGGAAGGTAAGAAGCCGAAGTTCTCCTTAGGTGTAGCTGAATCTAAGATTGGTTCACATATACAAGAAGCTACTAAAATTCCATGCCAAAGTAACGAGTTTGTGAATGAACTTATTCGTGGTGTTAGGCTTCATTTTGACAAGTTTGTTGGTGATCTCAAGCCAGGAGATTTGGAAAAGGCACAACTTGGTCTCTGCCACAGTTACAGCAGAGCAAAAGTGAAGTTCAATGTTAACCGGGTTGACAATATGGTCATCCAAGCAATCTTCCTACTCGATACACTTGATAAGGATATCAATTCATTTGCCATGAGAGTCAGAGAATGGTATTCATGGCATTTTCCTGAACTAGTGAAGATTGTAAATGATAATTATCTGTATTGCAAAGTAGCAAAATATGTTGAGGATAAGTCAAAGTTGGCCGAAGACAATATTGAAGCCTTAACTGACTTAGTTGGAGATGAAGATAAGGCAAAGGAGATTGTAGAAGCAGCAAAAGCCTCCATGGGTCAAGAATTGTCCCCTGTGGACTTGATCAATGTCCATCAGTTTGCTCAAAGGGTGATGGACCTATCTGACTACAGGAGAAGGTTGTCTGATTACCTGAGTACTAAAATGAATGATATTGCACCAAATTTGCAATCTTTAGTTGGTGATAGTGTTGGGGCTCGTTTAATTTCTCATGCTGGTAGTCTCACAAATTTAGCCAAGTGCCCATCATCAACTCTTCAGATTCTTGGTGCAGAGAAAGCTTTATTCAGGGCATTGAAAACAAGAGGAAACACTCCAAAATATGGTTTGATATTCCACTCTTCTTTTATTGGCCGAGCATCTGCCAAAAACAAGGGCCGCATGGCTCGCTATCTTGCAAACAAATGCTCTATTGCATCTAGGATTGACTGCTTTTCTGAAAAGGGTACTTCAGCATTTGGGGAGAAACTCCGTGAGCAAGTTGAGGAACGACTTGACTTTTACGATAAGGGAGTTGCCCCTCGTAAGAACATCGATGTCATGAAATCTGCTATTGAAGTTGCTGACAACATAGATACAGAAATGGAAACAGAGGAAGTATCTGCCAAGAAAACCAAGAAGAAGAAGCAAAAAGCTGCTGCAGACGAAGGTGAAGACGTAGCTGTTGAAAAAGCTGCTGCAGACAAAGGTGAAGACGTAGCTGTTGAAAAAGCTGCAGAAATTACAAATGGTGATAAGTCAGAAAAGAAGAAGAAAAAGAAAGAAAAGAGAAAATTAGACCAAGATGCTGATGTTCAGGATCAGGTTGTAGATGAAGCTGCCAATGGTGAGTCAGGAAAGAAGAAGAAGAAGAAGTCAAAGAGGAAGGATGTCGATTAA 1608 0.4167 MALFLLHETAAGYALFEAHGIDEIGQNTEAVRNSVSDLTRFGKVVKLRSFNPFTSALEGLEQINAVSEGIMTDELRTVLETSLPKVKEGKKPKFSLGVAESKIGSHIQEATKIPCQSNEFVNELIRGVRLHFDKFVGDLKPGDLEKAQLGLCHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFAMRVREWYSWHFPELVKIVNDNYLYCKVAKYVEDKSKLAEDNIEALTDLVGDEDKAKEIVEAAKASMGQELSPVDLINVHQFAQRVMDLSDYRRRLSDYLSTKMNDIAPNLQSLVGDSVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASAKNKGRMARYLANKCSIASRIDCFSEKGTSAFGEKLREQVEERLDFYDKGVAPRKNIDVMKSAIEVADNIDTEMETEEVSAKKTKKKKQKAAADEGEDVAVEKAAADKGEDVAVEKAAEITNGDKSEKKKKKKEKRKLDQDADVQDQVVDEAANGESGKKKKKKSKRKDVD 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03125 535 Pfam snoRNA binding domain, fibrillarin 177 409 IPR002687 -
Vifa4g03125 535 FunFam Nucleolar protein 56 140 298 - -
Vifa4g03125 535 MobiDBLite consensus disorder prediction 444 535 - -
Vifa4g03125 535 Pfam NOP5NT (NUC127) domain 4 69 IPR012974 -
Vifa4g03125 535 SUPERFAMILY Nop domain 163 412 IPR036070 -
Vifa4g03125 535 SMART NOSIC_2 170 222 IPR012976 -
Vifa4g03125 535 MobiDBLite consensus disorder prediction 444 508 - -
Vifa4g03125 535 Gene3D Nop domain 299 424 IPR042239 -
Vifa4g03125 535 Gene3D - 141 298 - -
Vifa4g03125 535 ProSiteProfiles Nop domain profile. 295 413 IPR002687 -
Vifa4g03125 535 FunFam Nucleolar protein 56 299 411 - -
Vifa4g03125 535 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 3 529 IPR045056 GO:0030515|GO:0031428|GO:0032040
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03125 Vifa-Chr4 991680925 991683719 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03125 K14564 - gmx:100815506 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03125 4 991680925 991683719 Vifa4g03125 4 991680925 991683719 ECH