Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0143 ATGAAACTTTTTCGTTCTCATGTTGCTAAATCATTTTCTGTTTTCAGGCAAAATTATGGCTGCGAGGTTGTTTGCTTCACTGCAGATGTTGGTCAAGGTATAAAGGAATTAGAGGGTTTGGAAGAAAAGGCCAAGGCAAGTGGGGCTTGCCAATTAGTGGTGAAGGATTTAAAGGAGGAGTTTGTGAAAGATTACATATTTCCTTGTCTACGAGCTGGTGCAATCTATGAAAGGAAGTACTTGCTAGGAACCTCAATGGCTCGCCCAGTAATTGCAAAGGCCATGGTTGATGTAGCTAAAGAAGTTGGAGCCGATGCTGTTTCTCATGGATGCACAGGGAAAGGAAATGACCAGGTCCGGTTTGAGCTTACTTTCTTTGCTCTAAATCCTGAACTCAATGTAGTAGCTCCTTGGAGGGAATGGGAAATTAGAGGGAGAGAAGATGCTATTGAATATGCGAAGAAACATAATGTGCCTGTTCCAGTGACCAAGAAATCAATTTACAGCAGAGATAGGAATCTGTGGCACCTCAGCCACGAGGGAGACATTTTGGAAGACCCAGAGAATGAGCCAAAGAATGATATGTACATGATGTCTGTTGACCCAGAACACGCTCCCGACCAGCCTGAATACATAGAAATTGGGATGGTTTCAGGCCTGCCTGTGTCGGTCAATGGGAAGGAGCTCTCTCCAGCATCTCTTCTATCTAAGCTAAATGAAATTGGTGGAAGACATGGAATTGGGCGTATTGACATGGTTGAAAACAGGCTTGTTGGAATGAAAAGCCGCGGAGTCTATGAAACCCCTGGTGGAACCATTCTTTTCACTGCTGCCCGTGAACTGGAATCTCTAACACTTGATCGTGAATCAATTCAACAGAAAGACTCGCTAGCTCTTAAGTATGCAGAACTAGTGTATGCAGGCAGGTGGTTTGACCCAATTCGCGAGTCCATAGATGCTTTCATGAAGAAGATCACAGAAACTACAACTGGGTCCGTGAGGCTCAAACTCTACAAAGGATCTGTCACTGTTGCCGGTCTCAAAAGCCCCTACAGCCTCTACAGGCAAGATATTTCATCGTTTGAGAGCGGGCAGATCTATGATCAGGCTGATGCTGCCGGATTCATTCGGCTCTATGGTCTTCCAATGAAGGTGAGAGCAATGCTTGAGAAGGGTATTTGA 1182 0.4492 MKLFRSHVAKSFSVFRQNYGCEVVCFTADVGQGIKELEGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAKEVGADAVSHGCTGKGNDQVRFELTFFALNPELNVVAPWREWEIRGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKNDMYMMSVDPEHAPDQPEYIEIGMVSGLPVSVNGKELSPASLLSKLNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFTAARELESLTLDRESIQQKDSLALKYAELVYAGRWFDPIRESIDAFMKKITETTTGSVRLKLYKGSVTVAGLKSPYSLYRQDISSFESGQIYDQADAAGFIRLYGLPMKVRAMLEKGI* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0143 393 Pfam Arginosuccinate synthase 14 385 IPR001518 GO:0004055|GO:0005524|GO:0006526
Vvi17g0143 393 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 198 - -
Vvi17g0143 393 Gene3D Argininosuccinate synthetase, chain A, domain 2 57 346 IPR024074 GO:0004055
Vvi17g0143 393 PANTHER ARGININOSUCCINATE SYNTHASE 17 391 IPR001518 GO:0004055|GO:0005524|GO:0006526
Vvi17g0143 393 FunFam Argininosuccinate synthase 11 168 - -
Vvi17g0143 393 SUPERFAMILY Argininosuccinate synthetase, C-terminal domain 165 391 IPR024074 GO:0004055
Vvi17g0143 393 Gene3D Single helix bin 367 392 - -
Vvi17g0143 393 Hamap Argininosuccinate synthase [argG]. 3 391 IPR023434 GO:0004055
Vvi17g0143 393 ProSitePatterns Argininosuccinate synthase signature 2. 110 121 IPR018223 GO:0004055|GO:0005524|GO:0006526
Vvi17g0143 393 Gene3D HUPs 15 166 IPR014729 -
Vvi17g0143 393 NCBIfam argininosuccinate synthase 15 387 IPR001518 GO:0004055|GO:0005524|GO:0006526
Vvi17g0143 393 CDD Argininosuccinate_Synthase 16 382 IPR023434 GO:0004055
Vvi17g0143 393 FunFam Argininosuccinate synthase 169 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0143 Vvi-Chr17 1246766 1249232 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0143 K01940 - vvi:100266261 743.806