Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5248 ATGTCGACGGAAGACAGCCATGGCATCGTTTCCGATTTCATCGACTTCCTGAACGCTTCTCCCACCGCTTTCCACGCCGTCGATGAGGCCAAGAAGCGGTTGCGAAACGCCGGATACGAACACCTCTCCGAGAAGGAAGTGTGGGAACTGAAACCAGGGAGCAAGTACTTCTTCACCAGAAACCACTCCACCATCGTTGCCTTCGCCATCGGCAAAAGGTATGTTGCTGGAAATGGATTTCACTTGATTGGGGCTCACACTGATAGTCCTTGTCTGAAACTGAAGCCGGTATCCAAGGTAGTTAAAGGTGAGATTTTGGAGGTTGGTGTTCAAACTTATGGAGGTGGCTTGTGGCACACGTGGTTCGATAGGGACTTGACTGTGGCCGGGAGGGTCATTGTAAGGGAAGGGAATAATGCTGGTTACTCACATCGACTTGTTAGAATTGATGAACCCATAATGCGGATCCCGACTTTGGCCATTCACTTAGACAGGGATGTTAATGATGGATTCAAAGTAAACAAGCAGACTCATCTTCTTCCCATTCTCGCAACAGCGCTGAAGGCAGAGGTTAATAAAGTGTCATCTGGAAATGGTCCAGTTGAAAGTGGAAAGCAGAGTGATGGAAAGAAAGAAAATGATAAATCAAAGCACCACCCTATTCTTCTACAGTTGCTTGCAAGCAAGCTTGGGTGTGAACCTGATGACATCTGTGATTTTGAATTGCAAGCATGTGATACGCAACCAAGTATAGTTGCTGGAGCTGCTAAGGAATTCATATTTTCAGGAAGGCTTGATAACCTCTGCATGTCATTTTGCTCATTGAAGGCATTAATAGATGCTACATCCTCCGACAGCAGTCTTGAGGAAGAGACTGGTGTTAGATTGGTGGCTTTGTTTGACCATGAGGAATGTGGATCTAATTCTGCTCAAGGAGCTGGCTCTCCTGTCATACTGAATGCTTTGACTAGGATTACAAATTCCTTCAGCTCGAATTCGAAGCTTCTTGAGACAGCAATACAAAGAAGCTTCCTTGTATCTGCTGATATGGCGCATGCTCTACACCCCAATTACATGGACAAGCATGAAGAAAACCATCAGCCTAAACTACATGCAGGACTTGTTATTAAAAACAATGCTAATCAACGCTATGCAACCAATGCTGTCACATCCTTCATATTCAGGGAAATAGCATCAAAGCATAACCTTCCCGTTCAGGACTTTGTGGTGCGCAATGACATGGCTTGTGGTTCAACCATCGGTCCTATCCTTGCAAGTGGCATGGGCATTCGCACAGTTGATGTTGGTGCACCGCAGTTGTCAATGCATAGCATTCGAGAAATGTGTGCTATTGATGATGTGAATTATTCATACAAGCATTTCAAGGCCTTTTTCCAAGAGTTCTCTCATCTAGATGCTAAGATTGTGGTGGACATATAG 1440 0.4507 MSTEDSHGIVSDFIDFLNASPTAFHAVDEAKKRLRNAGYEHLSEKEVWELKPGSKYFFTRNHSTIVAFAIGKRYVAGNGFHLIGAHTDSPCLKLKPVSKVVKGEILEVGVQTYGGGLWHTWFDRDLTVAGRVIVREGNNAGYSHRLVRIDEPIMRIPTLAIHLDRDVNDGFKVNKQTHLLPILATALKAEVNKVSSGNGPVESGKQSDGKKENDKSKHHPILLQLLASKLGCEPDDICDFELQACDTQPSIVAGAAKEFIFSGRLDNLCMSFCSLKALIDATSSDSSLEEETGVRLVALFDHEECGSNSAQGAGSPVILNALTRITNSFSSNSKLLETAIQRSFLVSADMAHALHPNYMDKHEENHQPKLHAGLVIKNNANQRYATNAVTSFIFREIASKHNLPVQDFVVRNDMACGSTIGPILASGMGIRTVDVGAPQLSMHSIREMCAIDDVNYSYKHFKAFFQEFSHLDAKIVVDI* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5248 479 MobiDBLite consensus disorder prediction 195 216 - -
Lja1g5248 479 PANTHER ASPARTYL AMINOPEPTIDASE 4 478 - -
Lja1g5248 479 Gene3D Aminopeptidase i, Domain 2 90 248 IPR023358 GO:0004177
Lja1g5248 479 Gene3D Zn peptidases 12 464 - -
Lja1g5248 479 SUPERFAMILY Aminopeptidase/glucanase lid domain 92 243 - -
Lja1g5248 479 SUPERFAMILY Zn-dependent exopeptidases 4 466 - -
Lja1g5248 479 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 150 167 IPR001948 GO:0004177|GO:0006508|GO:0008270
Lja1g5248 479 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 432 447 IPR001948 GO:0004177|GO:0006508|GO:0008270
Lja1g5248 479 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 300 318 IPR001948 GO:0004177|GO:0006508|GO:0008270
Lja1g5248 479 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 343 359 IPR001948 GO:0004177|GO:0006508|GO:0008270
Lja1g5248 479 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 80 96 IPR001948 GO:0004177|GO:0006508|GO:0008270
Lja1g5248 479 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 113 133 IPR001948 GO:0004177|GO:0006508|GO:0008270
Lja1g5248 479 PANTHER ASPARTYL AMINOPEPTIDASE 4 478 IPR001948 GO:0004177|GO:0006508|GO:0008270
Lja1g5248 479 CDD M18_DAP 12 466 - -
Lja1g5248 479 Pfam Aminopeptidase I zinc metalloprotease (M18) 16 465 IPR001948 GO:0004177|GO:0006508|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5248 Lja-Chr1 78941097 78945958 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5248 K01267 - gmx:100781379 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5248 1 78941097 78945958 Lja1g5248 1 78941097 78945958 ECH