Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2161 ATGGCACTGTTCCTTCTCTACGAATCTGCTTCGGGCTACGCTCTCTTCGAGGCTCATGGCCTCGACGAAATTGGTCAGAACACCGAAGCAGTTCGGAACTCCGTTTCCGACCTCAACAGGTTTGGGAAAGTCGTTAAGCTTCGTTCCTTCAATCCTTTCACTTCCGCCCTTGATGCCCTCAAGCAGTGCAATGCCGTCTCCGAAGGCATATTAACTGATGAGCTGAGAACTGTTTTGGAGACTAACTTGCCTAAAGTAAAGGAAGGTAAAAAGGCCAAGTTCAGTGTAGGTGTGTCTGATCCTAAGATTGGTTCGCAAATATCTGAAGTGTCAAAGATTCCTTGCCAGAGTAATGAGTTTGTGAGCGAACTTCTTCGTGGTGTTCGATTGCATTTTAATACCTTTGTTGGTGATCTAAAGTCTGGAGATTTGGAAAAGGCCCAACTTGGTCTGGGACATAGTTACAGCAGAGCGAAGGTGAAATTTAATGTCAATCGAGTGGACAACATGGTTATTCAAGCTATCTTCCTTCTCGATACACTTGATAAGGATGTCAATTCGTTCTCCATGAGAGTGAGAGAATGGTATTCATGGCATTTTCCTGAGCTGGTGAAAATTGTAAATGATAATTATCTGTATGCCAAAGTTTCAAAATATATTCAGGATAAGGCAAAGTTGACAGAAGACAATATTCCAGCCTTAACTGACATAGTTGGAGATGAAGATAAAGCAAAGGAGATTGTGGAAGCTGCCAAGGCCTCCATGGGTCAGGATTTGTCGCCAGTTGATTTGATCAATGTCCAACAATTTGCACAGAGGGTAATGGATCTGTCTGAGTACAGGAAGAACCTGTATGATTACCTGGTTGCTAAAATGAATGATATTGCACCAAATTTGGCCTCTTTGATTGGGGAAGTTGTTGGTGCTCGTTTGATTTCACATGCTGGTAGTCTGACAAATTTAGCTAAGTGCCCCTCATCAACTCTTCAAATTCTTGGTGCAGAGAAGGCTTTGTTCAGGGCATTAAAAACCAGAGGAAACACTCCCAAATATGGTTTGATATTCCACTCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGCAGAATGGCTCGTTACCTTGCAAACAAATGCTCAATTGCATCACGAATTGACTGCTTTTCAGAAAAAGGTACTACTGTTTTTGGGGAGAAACTCCGTGAACAAGTTGAGGAACGACTCGACTTTTATGACAAGGGCGTTGCTCCTCGCAAGAACTTAGATGTCATGCAGTCTGCCATTGAAAGTGCTGAAAACCAAGATACAGAGATGGAAACAGAAGGTGCCGTTGAAGTTTCAGACAAGAAAGCCAAAAAGAAGAAACAAAAATCTGCTGCTGACGAAGGTAGTGACATGATTGTAGATAAGCCTACAAAAGTTACAAATGGTGATGCTGCGGAGGATCATAAATCAGAGAAGAAAAAGAAAAAGAAAGAAAAGAGGAAGTTGGACCAGGAGACGGAGCATGAGGATCAGGCTGAAGACGATGGTGCCAATGGGGTCGTTAGTGAGCAGGATGGAACAGCTAAAAAAAAGAAGAATAAGAAGGTTAATAATGTAGTGGAGGCTGGTGAAGAGTCTAAGAAGAAGAAAAAGAAATCAAAAAAGGAAAGCGAGTAA 1662 0.4224 MALFLLYESASGYALFEAHGLDEIGQNTEAVRNSVSDLNRFGKVVKLRSFNPFTSALDALKQCNAVSEGILTDELRTVLETNLPKVKEGKKAKFSVGVSDPKIGSQISEVSKIPCQSNEFVSELLRGVRLHFNTFVGDLKSGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDVNSFSMRVREWYSWHFPELVKIVNDNYLYAKVSKYIQDKAKLTEDNIPALTDIVGDEDKAKEIVEAAKASMGQDLSPVDLINVQQFAQRVMDLSEYRKNLYDYLVAKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASAKNKGRMARYLANKCSIASRIDCFSEKGTTVFGEKLREQVEERLDFYDKGVAPRKNLDVMQSAIESAENQDTEMETEGAVEVSDKKAKKKKQKSAADEGSDMIVDKPTKVTNGDAAEDHKSEKKKKKKEKRKLDQETEHEDQAEDDGANGVVSEQDGTAKKKKNKKVNNVVEAGEESKKKKKKSKKESE* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2161 553 MobiDBLite consensus disorder prediction 442 468 - -
Pvu3g2161 553 Coils Coil 480 510 - -
Pvu3g2161 553 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 1 536 IPR045056 GO:0030515|GO:0031428|GO:0032040
Pvu3g2161 553 MobiDBLite consensus disorder prediction 475 502 - -
Pvu3g2161 553 SMART NOSIC_2 170 222 IPR012976 -
Pvu3g2161 553 Gene3D Nop domain 299 422 IPR042239 -
Pvu3g2161 553 Coils Coil 421 441 - -
Pvu3g2161 553 MobiDBLite consensus disorder prediction 520 553 - -
Pvu3g2161 553 Pfam snoRNA binding domain, fibrillarin 177 409 IPR002687 -
Pvu3g2161 553 ProSiteProfiles Nop domain profile. 295 413 IPR002687 -
Pvu3g2161 553 MobiDBLite consensus disorder prediction 430 553 - -
Pvu3g2161 553 SUPERFAMILY Nop domain 163 412 IPR036070 -
Pvu3g2161 553 Pfam NOP5NT (NUC127) domain 4 69 IPR012974 -
Pvu3g2161 553 PANTHER BNACNNG34340D PROTEIN 1 536 - -
Pvu3g2161 553 Gene3D - 140 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2161 Pvu-Chr3 42410908 42414511 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2161 K14564 - gmx:100794470 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2161 3 42410908 42414511 Pvu3g2161 3 42410908 42414511 ECH