Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0145 ATGGCGCTTTATCTTCTCTACGAATCGGCTTCTGGGTACGCTCTATTTCTCGCTCATGGGCTCGACGAAATCGGTCAGAACACCGAGGCGGTTCGGAGCTCCGTTTCGGATCTGAACCGATTCGGCAAGGTGGTAAAGCTGGCTGCTTTTCACCCGTTTGAATCCGCTCTCGATGCTCTGAATCAATGCAACTCAGTGTCTGAAGGGCTTATGACTGATGAGTTGAGGAGTTTCTTGGAGCTTAATCTTCCTAAAGTCAAGGAAGGTAAGAAGCCCAAGTTCAGTTTAGGAACTGCAGAACCTAAGATTGGATCGCATATCTTTGAAGATACTAAAATTCCTTGCCAAAGCAATGAGTTTGTTCTTGAGCTTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAGCCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGAGCAAAGGTGAAGTTCAATGTGAACAGAGTCGATAATATGGTCATTCAGGCCATCTTCCTTCTCGATACTCTTGATAAAGATATCAATTCCTTCTCCATGAGAGTCAGGGAATGGTACTCTTGGCATTTCCCTGAGTTGGTGAAGATAGTGAATGACAACTATCTCTATGCCAAAGTTGCAAAATTTGTTGAGAACAAGTTGGAGTTGTCTGAAGACAAAATTCCAGGCTTAACTGAGATCCTTGGAGATGAAGATAAAGCAAAGGAGATTGTGGAAGCTGCCAAAGCATCCATGGGACAGGATTTGTCCCCAATTGACTTGATTAATGTCCAGCAATTTGCGCAGAGGGTAATGGACCTCTCTGAGTACAGGAAGAAGCTGTATGAATATCTGGTTACTAAAATGAACGACATTGCACCCAATTTGGCTTCTCTAATTGGTGAAGTTGTTGGGGCACGGTTGATTTCTCATGCAGGTAGTCTCACTAATCTTGCAAAATGCCCTTCCTCCACTCTTCAGATCCTTGGTGCTGAAAAGGCTCTATTCAGGGCATTGAAAACAAGAGGGAACACGCCAAAATATGGTCTAATCTTCCATTCTTCTTTTATTGGTCGTGCATCTGCCCGGAACAAGGGACGTATGGCTCGTTATCTTGCAAACAAGTGTTCCATTGCTTCTCGTATTGACTGTTTTGCTGAGAGTAACACCACGGTTTTTGGGGAGAAACTCCGTGAACAAGTTGAGGAGCGACTCGAATTTTATGACAAGGGAATTGCACCTCGGAAAAACATTGATGTTATGAAAGCTGCCATTGAAATTACTCAAAACAATGACACGGAGGACAAAGCAACCACTGAGCCTTCAGCAAAGAAAAGCAAGAAAAAGAAGTCTAAAGTCGAGGCTGCAGAGGATGGTGAGCCCATGGTTGAGGATAAACCAACTGCTGCTACAAATGGAGATGCTTCTGAGGAACCCAAAACTGAGAAGAAGAAAAAGAAGGAGAAGCGAAAGTTGGTAGAAGAAGAAGAAGAAGAGCAGGTTCAGGCTGTGGAGAATTCAATTGGTGTGAACGGGGTTAACACAGAGGATGGAACAGCAAAGAAGAAGAAAAAGAAGAAGAGCAAGGATGAGGATGGAGAGCGTCTTGCAGCTGTCAGTGAAGGTAAGAAGAAAAAGAAGAAATCAAGAAGCGAAGACGATGATTAA 1677 0.4401 MALYLLYESASGYALFLAHGLDEIGQNTEAVRSSVSDLNRFGKVVKLAAFHPFESALDALNQCNSVSEGLMTDELRSFLELNLPKVKEGKKPKFSLGTAEPKIGSHIFEDTKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYAKVAKFVENKLELSEDKIPGLTEILGDEDKAKEIVEAAKASMGQDLSPIDLINVQQFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAESNTTVFGEKLREQVEERLEFYDKGIAPRKNIDVMKAAIEITQNNDTEDKATTEPSAKKSKKKKSKVEAAEDGEPMVEDKPTAATNGDASEEPKTEKKKKKEKRKLVEEEEEEQVQAVENSIGVNGVNTEDGTAKKKKKKKSKDEDGERLAAVSEGKKKKKKSRSEDDD* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0145 558 FunFam Nucleolar protein 56 140 298 - -
Vvi17g0145 558 MobiDBLite consensus disorder prediction 479 500 - -
Vvi17g0145 558 Gene3D - 141 298 - -
Vvi17g0145 558 MobiDBLite consensus disorder prediction 434 558 - -
Vvi17g0145 558 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 3 531 IPR045056 GO:0030515|GO:0031428|GO:0032040
Vvi17g0145 558 Pfam snoRNA binding domain, fibrillarin 177 409 IPR002687 -
Vvi17g0145 558 Gene3D Nop domain 299 411 IPR042239 -
Vvi17g0145 558 SUPERFAMILY Nop domain 163 412 IPR036070 -
Vvi17g0145 558 SMART NOSIC_2 170 222 IPR012976 -
Vvi17g0145 558 MobiDBLite consensus disorder prediction 453 467 - -
Vvi17g0145 558 FunFam Nucleolar protein 56 299 411 - -
Vvi17g0145 558 MobiDBLite consensus disorder prediction 520 558 - -
Vvi17g0145 558 Coils Coil 481 509 - -
Vvi17g0145 558 ProSiteProfiles Nop domain profile. 295 413 IPR002687 -
Vvi17g0145 558 Pfam NOP5NT (NUC127) domain 4 69 IPR012974 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0145 Vvi-Chr17 1274905 1279148 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0145 K14564 - vvi:100267928 989.178