Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0389 . . . Aed2g1646 . . . . . . . . . . . Bva02g01017 Car07g03291 Cca01g01409 . . . . . . . . . . . Lan12g0060 . . . . . . . . . Mal5g0247 Mepo1g04564 . . Mtr8g0211 . Phco1g01847 . . Pste7g00367 . . . Spst4g01097 . . . . . Vian9g01379 Vifa4g01627 Vimu9g01551 Viun10g00343 . Vra9g0824
Pvu10g0390 . . . Aed2g1647 . . . . . . . . . . . Bva02g01016 Car07g03292 Cca01g01410 . . . . . . . . . . . . . . Lapu10g00901 Lasa4g00239 . . . . Lja3g4518 . Mepo1g04566 . . Mtr8g0210 . . . . . . . . Spst4g01099 . . . . Tsu08g00179 Vian9g01380 Vifa4g01629 Vimu9g01558 Viun10g00339 . .
Pvu10g0391 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0392 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0393 . . . . . . . . . . . . . . . . . Cca01g01411 . . . . . . . . . . . . . . Lapu10g00900 . . . . . Lja3g4519 . . . . . . Phco1g01849 . . . . . . Spst4g01096 . . . . Tsu08g00178 . . Vimu9g01561 Viun10g00337 . Vra9g0821
Pvu10g0394 . . . . . . . . . . . Apr10g0187 . . . . . . . . . . . . . . . . . . . . . Lasa4g00240 . . . . . . . . . . . . . . . . . . Spst4g01093 . . . . Tsu08g00174 . . Vimu9g01563 . . Vra9g0820
Pvu10g0395 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01853 . . . . . . Spst4g01092 Ssu2g0711 . . . . . . Vimu9g01564 . Vivi7g03479 .
Pvu10g0396 . . . . . . . . . . . Apr10g0181 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01854 . . . . . . . Ssu2g0712 . . . . . . Vimu9g01565 . . Vra9g0819
Pvu10g0397 . . . . . . . . . . . . . . . . . . . . . . . . . . Lal14g0168 . . . . . . . . . . . . . . . . . . Phco1g01855 . . . . . . . Ssu2g0713 . . . . . . Vimu9g01566 . . .
Pvu10g0398 . . Adu02g00138 Aed2g1654 . Ahy19g0781 Ahy2g0118 Aip09g00867 . Amo19g0745 Amo02g0421 Apr10g0180 Arst2g00171 . . . Car07g03293 Cca01g01412 . . . . Gma03g00899 . . Gso3g0836 . . Lal19g0061 . Lan1g0905 . Lapu10g00891 Lasa4g00241 . . . . Lja3g4522 Mal5g0244 Mepo1g04570 . . Mtr8g0205 . . . . Pste7g00363 . Rops4g00403 Seca4g10313 Spst4g01088 . . . Trre15g00213 Tsu08g00172 Vian9g01385 Vifa4g01634 Vimu9g01567 Viun10g00335 Vivi7g03474 Vra9g0818
   
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Select Species Gene Chromosome Start End Strand
Lasa Lasa4g00240 Chr4 8760427 8762532 -
Spst Spst4g01099 Chr4 43837990 43840622 +
Pvu Pvu10g0389 Chr10 5466888 5471446 +
Aed Aed2g1646 Chr2 20825692 20828830 -
Bva Bva02g01017 Chr02 14473197 14477977 -
Car Car07g03291 Chr07 60661758 60667202 +
Cca Cca01g01409 Chr01 28651681 28674383 +
Lan Lan12g0060 Chr12 538805 546137 -
Mal Mal5g0247 Chr5 4128769 4132745 +
Mepo Mepo1g04564 Chr1 53452820 53462725 -
Mtr Mtr8g0211 Chr8 2415419 2419526 +
Phco Phco1g01847 Chr1 58053995 58058168 +
Pste Pste7g00367 Chr7 3485002 3486304 +
Spst Spst4g01097 Chr4 43820013 43824294 +
Vian Vian9g01379 Chr9 29284681 29288606 -
Vifa Vifa4g01627 Chr4 468080140 468083336 +
Vimu Vimu9g01551 Chr9 24773580 24776807 +
Viun Viun10g00343 Chr10 2822066 2826172 -
Vra Vra9g0824 Chr9 9693387 9697517 -
Pvu Pvu10g0390 Chr10 5478771 5482726 +
Aed Aed2g1647 Chr2 20833690 20835042 -
Bva Bva02g01016 Chr02 14466872 14470634 -
Car Car07g03292 Chr07 60685356 60723801 -
Cca Cca01g01410 Chr01 28748577 28751310 -
Lapu Lapu10g00901 Chr10 10815702 10817552 -
Lasa Lasa4g00239 Chr4 8724337 8726558 -
Lja Lja3g4518 Chr3 86981107 86984465 -
Mepo Mepo1g04566 Chr1 53473619 53478172 -
Mtr Mtr8g0210 Chr8 2397967 2410084 +
Spst Spst4g01099 Chr4 43837990 43840622 +
Tsu Tsu08g00179 Chr08 1652754 1656194 +
Vian Vian9g01380 Chr9 29294004 29296986 +
Vifa Vifa4g01629 Chr4 468867211 468869891 -
Vimu Vimu9g01558 Chr9 24817922 24819934 +
Viun Viun10g00339 Chr10 2787612 2792759 +
Pvu Pvu10g0391 Chr10 5489427 5489642 -
Pvu Pvu10g0392 Chr10 5490952 5492277 -
Pvu Pvu10g0393 Chr10 5499042 5502715 -
Cca Cca01g01411 Chr01 28767107 28771177 +
Lapu Lapu10g00900 Chr10 10803113 10805771 -
Lja Lja3g4519 Chr3 86987575 86991924 -
Phco Phco1g01849 Chr1 58083511 58088303 +
Spst Spst4g01096 Chr4 43818387 43819688 -
Tsu Tsu08g00178 Chr08 1640484 1650471 +
Vimu Vimu9g01561 Chr9 24830005 24832129 +
Viun Viun10g00337 Chr10 2759612 2765062 -
Vra Vra9g0821 Chr9 9583775 9586564 -
Pvu Pvu10g0394 Chr10 5505184 5512123 -
Apr Apr10g0187 Chr10 4441909 4450902 +
Lasa Lasa4g00240 Chr4 8760427 8762532 -
Spst Spst4g01093 Chr4 43777822 43780040 +
Tsu Tsu08g00174 Chr08 1616773 1629423 +
Vimu Vimu9g01563 Chr9 24855611 24858140 +
Vra Vra9g0820 Chr9 9580082 9582682 +
Pvu Pvu10g0395 Chr10 5527825 5532170 -
Phco Phco1g01853 Chr1 58118117 58121952 -
Spst Spst4g01092 Chr4 43766412 43770362 -
Ssu Ssu2g0711 Chr2 38712057 38714848 +
Vimu Vimu9g01564 Chr9 24861364 24867687 +
Vivi Vivi7g03479 Chr7 100461031 100463530 +
Pvu Pvu10g0396 Chr10 5562682 5565487 -
Apr Apr10g0181 Chr10 4260522 4264365 +
Phco Phco1g01854 Chr1 58124600 58128088 -
Ssu Ssu2g0712 Chr2 38758530 38772127 -
Vimu Vimu9g01565 Chr9 24868487 24871505 -
Vra Vra9g0819 Chr9 9559352 9560676 +
Pvu Pvu10g0397 Chr10 5594993 5599441 +
Lal Lal14g0168 Chr14 1820116 1865064 +
Phco Phco1g01855 Chr1 58131776 58136321 -
Ssu Ssu2g0713 Chr2 38788394 38792682 -
Vimu Vimu9g01566 Chr9 24873949 24891805 -
Pvu Pvu10g0398 Chr10 5608626 5612307 +
Adu Adu02g00138 Chr02 1506155 1509363 -
Aed Aed2g1654 Chr2 20927630 20932208 +
Ahy Ahy19g0781 Chr19 11244974 11248311 +
Ahy Ahy2g0118 Chr2 1306275 1310516 -
Aip Aip09g00867 Chr09 11474650 11477879 +
Amo Amo19g0745 Chr19 11606321 11610053 +
Amo Amo02g0421 Chr02 5207485 5210730 +
Apr Apr10g0180 Chr10 4250941 4254422 -
Arst Arst2g00171 Chr2 1486800 1490120 -
Car Car07g03293 Chr07 60747771 60750875 +
Cca Cca01g01412 Chr01 28776598 28780216 +
Gma Gma03g00899 Chr03 31829486 31833564 +
Gso Gso3g0836 Chr3 30372813 30376547 +
Lal Lal19g0061 Chr19 454182 456365 -
Lan Lan1g0905 Chr1 19835609 19839362 +
Lapu Lapu10g00891 Chr10 10737211 10741067 -
Lasa Lasa4g00241 Chr4 8772434 8774804 +
Lja Lja3g4522 Chr3 87005940 87008761 +
Mal Mal5g0244 Chr5 4107343 4109071 -
Mepo Mepo1g04570 Chr1 53499721 53502350 +
Mtr Mtr8g0205 Chr8 2372079 2375142 -
Pste Pste7g00363 Chr7 3448572 3455066 -
Rops Rops4g00403 Chr4 12077616 12084420 +
Seca Seca4g10313 Chr4 238582034 238595610 -
Spst Spst4g01088 Chr4 43714455 43714619 -
Trre Trre15g00213 Chr15 1461335 1463216 -
Tsu Tsu08g00172 Chr08 1576396 1578427 -
Vian Vian9g01385 Chr9 29463881 29466994 +
Vifa Vifa4g01634 Chr4 470551324 470552609 +
Vimu Vimu9g01567 Chr9 24899157 24902404 +
Viun Viun10g00335 Chr10 2725430 2729054 -
Vivi Vivi7g03474 Chr7 100423870 100425514 -
Vra Vra9g0818 Chr9 9547246 9550627 -