Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03292 ATGCAAGTGTTAATCACTTTAGTTTTGGTTCTTGGTTTTGTTTCACCTTCTCTATGTACAAGGTGGAATGTAGTTGAAGCAAACAATAATAATAATACATATAATGTGATGCAATATGGTGCTAGTGGTGATGGCAAATCTGACGATTCACAAGCATTTTTAACGGCATGGAACAATGTGTGTGGAGCACAAGGGGATGCAACACTAGTTATACCACCAAATCTATTATTCTTAGTGAACAATTTAATATTTCAAGGTCCTTGCAAGGCCTCAAGGATTACAATTCAGCTTGAAGGTACCATAGTTGCACCTTCCAAGGAAGCTTTCCATGATATGGAATATTGGATTAGGATTCAATATATAAACAATCTTACACTTGATGGTCGTAACATTGGAAAAATCGACGGCTATGGATCTACTTGGTGGGAATGTAAAAGTTGCCCTCGACCTAGAGCCATAGCTATCCATGCATGCAATGATCTTTTTGTTACTAGCATGAGGGTGACTGATAGTGCAGGAGGTCATATATCCATAAATGGTTGCAAGAATGCAACATTCTCTCATTTATTTGTTGATGCTCCCGGTACTAGTCCCAACACAGATGGTTTTGACATTTCTGCTTCTCAAAATATTCTCATAAAAGATTCTGTCATTAGCACAGGTGATGATTGTATTGCTGTCAACGGTGGTTCTTCATACATCAATGCTACTCGTCTTTACTGTGGACCAGGCCATGGAATAAGCGTTGGCAGCCTTGGTAGAGGTAGATCTTACGAGACAGTTGAAGAGGTTCATGTATATAATTGTACCTTCACGAACACTACAAATGGAGCAAGAATCAAGACATATCCGGGTGGATCAGGTTACGCAAGGAAGATTACTTTTGAGCAAATTAATCTTATAAATGTTACCTATCCGATAATCATAGACCAACACTATGGTGTTAAAGATGAAACGGAATCAGCTGTACTGGTGAGTGACGTAACATATCGTGGATTTAATGGAACGGCATTTTATGACGTTGCTATTAAGCTAGACTGTAGTCCATTGGGTTGTTCCAATATTGTATTGGATGACATTAACATTGTCTCTTCTCGAATTGGAAAGACTGTCGGTGCCTTTTGCCAAAATCTTCATGGAACAATTAAATCCACAATTCCATCGGTCTCATGCACATAA 1179 0.3868 MQVLITLVLVLGFVSPSLCTRWNVVEANNNNNTYNVMQYGASGDGKSDDSQAFLTAWNNVCGAQGDATLVIPPNLLFLVNNLIFQGPCKASRITIQLEGTIVAPSKEAFHDMEYWIRIQYINNLTLDGRNIGKIDGYGSTWWECKSCPRPRAIAIHACNDLFVTSMRVTDSAGGHISINGCKNATFSHLFVDAPGTSPNTDGFDISASQNILIKDSVISTGDDCIAVNGGSSYINATRLYCGPGHGISVGSLGRGRSYETVEEVHVYNCTFTNTTNGARIKTYPGGSGYARKITFEQINLINVTYPIIIDQHYGVKDETESAVLVSDVTYRGFNGTAFYDVAIKLDCSPLGCSNIVLDDINIVSSRIGKTVGAFCQNLHGTIKSTIPSVSCT 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03292 392 Gene3D - 19 391 IPR012334 -
Car07g03292 392 Pfam Glycosyl hydrolases family 28 61 379 IPR000743 GO:0004650|GO:0005975
Car07g03292 392 ProSitePatterns Polygalacturonase active site. 238 251 IPR000743 GO:0004650|GO:0005975
Car07g03292 392 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 391 - -
Car07g03292 392 SMART pbh1 352 373 IPR006626 -
Car07g03292 392 SMART pbh1 290 311 IPR006626 -
Car07g03292 392 SMART pbh1 261 282 IPR006626 -
Car07g03292 392 SMART pbh1 158 207 IPR006626 -
Car07g03292 392 SMART pbh1 208 229 IPR006626 -
Car07g03292 392 PANTHER - 1 391 - -
Car07g03292 392 SUPERFAMILY Pectin lyase-like 30 391 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03292 Car-Chr7 60685356 60723801 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g03292 30 380 Glycoside Hydrolase AT5G44840 44.598 4.12e-98 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03292 K01184 - gmx:100820332 452.21