Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01847 ATGGGATCTACCAACACATACAATGTCATTGACTATGGTGCAACTGGTGATGGTAAAACTGATGATTCTCAGGCATTTTTAAGTGCATGGCAAAAGACATGCTCAACACCAGGAGCATCAACTCTAGTTATACCATCAAAAGGAGTATTTTTATTGAAGAAGAACATAATCCTGAAAGGTCCTTGCCAAGCCACAAACATGAACATTCAGCTTGAAGGAAGAATAACAGTAGCAAGCCAGAGTGCATGGGTAGGTGATAAATCTATGATAATTTTGATCACAAACGTGAATGGTCTCACCATTGATGGAAGTGGAGGATCAATCGAGGGCTTCGGTTCTTCTTGGTGGCCATGCAAAAAGTGTCCACGACCATCGGTCCTTAGTTTCAATTCATGCAATGGTCTTAGTGTTAGTTACTTGACTATCAGAAATAGTCCACAAGCTCACATAACCATAAATGGCTGTGTTGGTGCAACATTCTCTAATATTATCATTCAGTCTCCTAGTGATAGCCCTAACACTGATGGAATTGACATTTCTTCTTCCAAAAATATCTGGATAAAAGACTCCACTATAGCTTCTGGTGATGACTGTATTGCAATCATAGGTGACTCTTCTTACATCAATGCTACTGGAATTGCTTGTGGACCAGGCCATGGAATAAGCATTGGTAGCCTGGGTAGAAACCAAGGCCATGACAAGGTGGAACAAGTTTATGTATATAATTGCAGCTTCACCCAAACTACAAATGGAGCAAGAATCAAGACATTTCAGGGTGGACCAGGTTATGCCAAAAACATCATTTATGAGAAAATTACATTAACACAGGCTTACAACCCAATAATTATAAATCAAAACTATACGGATTTAACGAGTGATGGAGGAGTTCAAGTGAGTGGGGTGACATTTCGAGGGTTTAAAGGAACATCTGCAGACGACAAAGCCATTACCTTAGCTTGCGGTTCACAAGGTTGTTTCAACATTGTGTTGGATCAAATTAGCATTACATCTTCTCTATCAGGAAAACCAGCTTCTTGTTCTTGTATTAATGCCCATGGAACAGCTACATCCACAGATCCAAATTGTGCTTCCTTATTGAAATGA 1104 0.3976 MGSTNTYNVIDYGATGDGKTDDSQAFLSAWQKTCSTPGASTLVIPSKGVFLLKKNIILKGPCQATNMNIQLEGRITVASQSAWVGDKSMIILITNVNGLTIDGSGGSIEGFGSSWWPCKKCPRPSVLSFNSCNGLSVSYLTIRNSPQAHITINGCVGATFSNIIIQSPSDSPNTDGIDISSSKNIWIKDSTIASGDDCIAIIGDSSYINATGIACGPGHGISIGSLGRNQGHDKVEQVYVYNCSFTQTTNGARIKTFQGGPGYAKNIIYEKITLTQAYNPIIINQNYTDLTSDGGVQVSGVTFRGFKGTSADDKAITLACGSQGCFNIVLDQISITSSLSGKPASCSCINAHGTATSTDPNCASLLK 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01847 367 ProSitePatterns Polygalacturonase active site. 212 225 IPR000743 GO:0004650|GO:0005975
Phco1g01847 367 SMART pbh1 293 320 IPR006626 -
Phco1g01847 367 SMART pbh1 155 181 IPR006626 -
Phco1g01847 367 SMART pbh1 235 256 IPR006626 -
Phco1g01847 367 SMART pbh1 182 203 IPR006626 -
Phco1g01847 367 SUPERFAMILY Pectin lyase-like 5 358 IPR011050 -
Phco1g01847 367 PANTHER - 5 354 - -
Phco1g01847 367 Pfam Glycosyl hydrolases family 28 34 352 IPR000743 GO:0004650|GO:0005975
Phco1g01847 367 Gene3D - 1 365 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01847 Phco-Chr1 58053995 58058168 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g01847 1 58053995 58058168 Phco1g01847 1 58053995 58058168 ECH