Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03479 ATGAAAGTTCTAATCTTTTGTATTTTGATTCTTGGTTTTGTTTCATCTTGTTTAAGTGATAGGTGGAATATCAATGCAGCTCCAACAAAGAATAATATCTACAATGTGATTGATTATGGGGCTCGTGGTGATGGAGTAACAGATGATACACAAGCATTTTTAAAAGCATGGAGTGATACTTGTGGAGCTGAAGGTGCATCAACCTTGCTTATACCACAAAACAAATTATACTTGGTGAACAACATGGTACTTAGTGGTGATTGCAAGGCCAAAAGTATTCTCATTCAGCTTGAAGGAAAAATAACTGCACCTCCCCAGGATGGATTTAAGGATAAGTCATATTGGATTAGGATCCAATACATAAACAATCTCACGATTGATGGCAATGGCATAGGGGAAATCACAGGCCAAGGTTCTACTTGGTGGCAATGCAGAAAGTGCCCTAGGCCTACAAGCGTGTTTTTCCATTCATGCAATGATCTTTCTGTTAGTAATTTGAGGATTACTAATAGCCCAGGAGGTCATATATCTATAAATGGTTGCAACAATGTAAAATTCACTCACATGAACGTTCAATCTCCCGGTGATAGTCCTAACACTGATGGGTTTGACATTTCGTTATCTAAAAATGTATTGATAGAAGATTCCGCCATAGAAGTAGGTGATGATTGTATTGCTATTAACGGCGGCTCGTCATTTATCAATGCTTCTCGCCTCGCTTGTGGCCCTGGCCATGGAATAAGCATTGGCAGTCTTGGTAAAGATAATTCTCATGAGATAGTTGAAGAAGTACATGTACAAAATTGCAACTTCACTAATACTACAAATGGAGCTAGAATTAAGACATTTCCTGGTGGATCGGGTTATGCAAGGAAGATTAGTTTTGAACAAATCCAACTTACAGATGTTAAGAATGCAATAATTATAGACCAAAACTACGGCATTAAACTTTCGGAGGTTTCTGCTGTGCAAGTGAATGATGTTAGATTTTATGGGTTTAATGGAACTTCTGCTAGTGACTTGGCTATTAATTTGAAGTGTGAGAGCTGCTTCAATGTTGAATTGGATCAAATTAATATTGTTTCTTCTCAACCTAAAAAGGAGGCTCAGGCTTACTGCCAAAATTTCCATGGAAAAATTGGCTCAACTGTTCCAAAAGTCAATTGCAATTGA 1173 0.3768 MKVLIFCILILGFVSSCLSDRWNINAAPTKNNIYNVIDYGARGDGVTDDTQAFLKAWSDTCGAEGASTLLIPQNKLYLVNNMVLSGDCKAKSILIQLEGKITAPPQDGFKDKSYWIRIQYINNLTIDGNGIGEITGQGSTWWQCRKCPRPTSVFFHSCNDLSVSNLRITNSPGGHISINGCNNVKFTHMNVQSPGDSPNTDGFDISLSKNVLIEDSAIEVGDDCIAINGGSSFINASRLACGPGHGISIGSLGKDNSHEIVEEVHVQNCNFTNTTNGARIKTFPGGSGYARKISFEQIQLTDVKNAIIIDQNYGIKLSEVSAVQVNDVRFYGFNGTSASDLAINLKCESCFNVELDQINIVSSQPKKEAQAYCQNFHGKIGSTVPKVNCN 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03479 390 Pfam Glycosyl hydrolases family 28 61 377 IPR000743 GO:0004650|GO:0005975
Vivi7g03479 390 Gene3D - 22 388 IPR012334 -
Vivi7g03479 390 ProSitePatterns Polygalacturonase active site. 238 251 IPR000743 GO:0004650|GO:0005975
Vivi7g03479 390 SMART pbh1 261 282 IPR006626 -
Vivi7g03479 390 SMART pbh1 158 180 IPR006626 -
Vivi7g03479 390 SMART pbh1 320 347 IPR006626 -
Vivi7g03479 390 SMART pbh1 208 229 IPR006626 -
Vivi7g03479 390 SMART pbh1 181 207 IPR006626 -
Vivi7g03479 390 PANTHER - 31 378 - -
Vivi7g03479 390 SUPERFAMILY Pectin lyase-like 28 389 IPR011050 -
Vivi7g03479 390 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03479 Vivi-Chr7 100461031 100463530 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03479 1 379 Glycoside Hydrolase AT5G44840 42.199 3.11e-97 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03479 K01184 - mtr:25498049 520.776