Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0390 GCATTTTTAAAAGCTTGGCAAAGCACTTGTGGAGCACAAGGGATGGCAACCCTAGTCATACCTGCAAACTATGAATTCCTTTTGTCACCCTTAATGCTAAAGGGTCCTTGCCATGCCTCAAATATTCAAATTCAGCTTCGGGGGAAAATAGTTGCAGCTACCAAGAGTGCATGGCCATCCTATAAGTATACTTGGATTTTGATCACAAATGTAAATGGTCTCACAGTTGATGGTACTGGAGGATCACTCGATGGCTTCGGTTCTTCATGGTGGCCATGCAGAACATGTCCACGACCATCGGTGATTACTTTCAATGCATGCACTGGTCTCAGTGTTAGCCACTTGAACATCATTAACAGTCTAAAATCTCACATAAACATAAACGGCTGTGTGAGAGCGACATTCTCTGGTATCAGTATTCTGTCTCCTGCTGACAGTCATAATACTGATGGAATCACTGTTTATGGTTCCAAAAATGTATGGATCAGAGATTCAACTATAGCATGTGGTGATGATTGCATTGCCATCAGTGGTGGCTCCTCTTATGTCAATGTTACTGGAATTGCTTGTGGACCAGGCCATGGAATAAGCATTGGGAGCCTGGGAAATGGCAACAGTAACACAGTGGAACAAGTTCATGTACGAAATTGCAACTTCACAAAAACACAAAATGGAGCAAGAATCAAAACATTTGAGGGTAGAACTGGTTATGCAAGAGGAATCACTTTTGAGGAAATTACATTGATACAAACTCGAAACCCAATAATTATTAACCAATTCTACACTAACAGGAAGCCTTCTTTACAGAATGGAGGAGTTGAAGTGAGTGGAATCACATTTCGTGGATTTCATGGAACAAGTATGACCAATGAAGCCATTACCTTGAATTGTGGTCCACAAGGTTGTTACAACATTGTACTGGATCAAAACAACATTGCCTCTTCTAATCCAGGAAAACCAGCTTCTTGTTCTTGCAAGAATGCCCATGGAACAGTCTCATCTACACTTCCAACTTGTCCTTGCTTATTGCCATGA 1035 0.4135 AFLKAWQSTCGAQGMATLVIPANYEFLLSPLMLKGPCHASNIQIQLRGKIVAATKSAWPSYKYTWILITNVNGLTVDGTGGSLDGFGSSWWPCRTCPRPSVITFNACTGLSVSHLNIINSLKSHININGCVRATFSGISILSPADSHNTDGITVYGSKNVWIRDSTIACGDDCIAISGGSSYVNVTGIACGPGHGISIGSLGNGNSNTVEQVHVRNCNFTKTQNGARIKTFEGRTGYARGITFEEITLIQTRNPIIINQFYTNRKPSLQNGGVEVSGITFRGFHGTSMTNEAITLNCGPQGCYNIVLDQNNIASSNPGKPASCSCKNAHGTVSSTLPTCPCLLP* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0390 344 Gene3D - 1 339 IPR012334 -
Pvu10g0390 344 SMART pbh1 180 200 IPR006626 -
Pvu10g0390 344 SMART pbh1 270 297 IPR006626 -
Pvu10g0390 344 SMART pbh1 209 230 IPR006626 -
Pvu10g0390 344 SMART pbh1 238 259 IPR006626 -
Pvu10g0390 344 SMART pbh1 157 178 IPR006626 -
Pvu10g0390 344 SMART pbh1 130 156 IPR006626 -
Pvu10g0390 344 ProSitePatterns Polygalacturonase active site. 187 200 IPR000743 GO:0004650|GO:0005975
Pvu10g0390 344 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 342 - -
Pvu10g0390 344 SUPERFAMILY Pectin lyase-like 1 342 IPR011050 -
Pvu10g0390 344 Pfam Glycosyl hydrolases family 28 10 331 IPR000743 GO:0004650|GO:0005975
Pvu10g0390 344 PANTHER - 1 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0390 Pvu-Chr10 5478771 5482726 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0390 1 339 Glycoside Hydrolase AT5G17200 42.308 3.52e-93 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0390 K01184 - gmx:100801217 465.307