Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01627 ATGCAAGGATTCATTACCTACGTTTTGATTCTATCTTTTATTTCACCTTGTATTTGTATAAGAGTGAAATATGTAACCGAAAATAATACTTATAATGTGATGCAATATGGTGCAATTGGCGACGGCAAATCTGATGATACACAAGCATTTTCAAGAGCATGGAATAGTGCCTGTAATGCAGGAGGAATGTCAACATTAGTTATACCATCGGAGAAATCATTCTTTGTGACGAAAGTAAATTTTAGTGGACCTTGCGATAGCAAAATTCTCATTCAGTTTGAAGGAAAAATAGTGGCACCTTGTAAACAAGAGTGGAGAGGAGAATCATATTTGATTACTATCGAATATTTAAATGGACTCACAATTGATGGCAATGGTCTAGGAGAAGTCGATGGAAATGGTTCTACTTGGTGGGATTGCCCAAATTGTGATCGACCAGGGCTATTTCATTTTCATTCATGCAATAATCTTACTGTTAGTAACCTGGCGATCAGTAATAGTCCAAGAGCTCATGTATCTGCTAATCATTGTAATGGTGCAACATTCTCTAATATATCCATTGATTCTCCTGCTCATAGTCCAAACACTGATGGATTTGACATTTCTGCTTCTACTAATATCTCTATACAAGATTCTAACATAAAAGCAGGTGATGACTGTATTGCCATCAATGGTGGCTCCTATTTTGTGAATGTTACTCGAATTACTTGTGGACCTGGCCATGGGATAAGTGTTGGTAGTCTTGGTAAACATAATGCAAATGATCAAGTTTCTGATATTTATGTATGGAATTGCACTTTCACGGGATCCACTAATGGAGCTAGAATCAAGACAGTTCCGGGTGGATCAGGTTATGCAAAAAATATTACATATGAACAAATAATCCTTGAAAATGTGACGAACCCAATAATCATAGATCAGGATTACCGTGATCTAGAGGAAACACCATCTGTGTTAGTGAGTTCTGTGACATATCGAGGATTTAAAGGAACTTTTGTTAACAAAGTAGCCATTAAATTAGATTGTAGTTCATCCGGTTGTTTAGACATTCTATTGGATCAAAACAACATTGTACCAGCTGAAGAAGGAGGGGCTGCTTCTGTTATTTGTAGAAATGCTCATGGAACAGCTAGAGATACTATTCCACAAGTCAATTGTCTTTCTGAATAA 1170 0.3658 MQGFITYVLILSFISPCICIRVKYVTENNTYNVMQYGAIGDGKSDDTQAFSRAWNSACNAGGMSTLVIPSEKSFFVTKVNFSGPCDSKILIQFEGKIVAPCKQEWRGESYLITIEYLNGLTIDGNGLGEVDGNGSTWWDCPNCDRPGLFHFHSCNNLTVSNLAISNSPRAHVSANHCNGATFSNISIDSPAHSPNTDGFDISASTNISIQDSNIKAGDDCIAINGGSYFVNVTRITCGPGHGISVGSLGKHNANDQVSDIYVWNCTFTGSTNGARIKTVPGGSGYAKNITYEQIILENVTNPIIIDQDYRDLEETPSVLVSSVTYRGFKGTFVNKVAIKLDCSSSGCLDILLDQNNIVPAEEGGAASVICRNAHGTARDTIPQVNCLSE 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01627 389 SMART pbh1 286 307 IPR006626 -
Vifa4g01627 389 SMART pbh1 204 225 IPR006626 -
Vifa4g01627 389 SMART pbh1 257 278 IPR006626 -
Vifa4g01627 389 SMART pbh1 177 203 IPR006626 -
Vifa4g01627 389 SUPERFAMILY Pectin lyase-like 20 387 IPR011050 -
Vifa4g01627 389 Gene3D - 19 387 IPR012334 -
Vifa4g01627 389 ProSitePatterns Polygalacturonase active site. 234 247 IPR000743 GO:0004650|GO:0005975
Vifa4g01627 389 PANTHER - 28 375 - -
Vifa4g01627 389 Pfam Glycosyl hydrolases family 28 58 374 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01627 Vifa-Chr4 468080140 468083336 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01627 1 387 Glycoside Hydrolase AT5G27530 43.719 2.38e-97 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01627 K01184 - mtr:25500200 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01627 4 468080140 468083336 Vifa4g01627 4 468080140 468083336 ECH