Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01380 ATGCAAAGGCTAATTACTAGGGTTTTGATTGTTTCCTTCATTTCACAATGTTTATGTGACATGTCTATGGTTGAATTCAAAAATACAATTTATGATGTGAGAAACTATGGTGCCAATGGCAATGGAAAATCTGATGATTCTAAGGCTTTAATGGATGCATGGAATGACATATGTGGAAGACAAGGGACACCAACTCTCTTGATACCACAAAATAGAGTGTTCTTGGTGAAGAGGAACATAATCATGAAAGGTCCATGCAAGGCCACAAATATTAATATTCAGCTTCAAGGAAAAATAGTGGCATCACAGAAGAATGCATGGCAAGGTGATAAATCTACGGTGATTTATTTCACAAACATAAACGGTCTTAGAATTGTTGGAAAAGGAGGATTAATCGATGGTTTTGGTTCCTCTTGGTGGCCATGCAAAAACTGTCAAAGACCAGCGGTCCTTGGTTTCAATGCATGCAATGGTCTCAGTGTTAGTTATCTGAGAATCACAAATAGTCCACAAGCTCACATAACCATAAATGAATGTGACGGTGCCATATTCTCACATATTAGCATTCGCTCTCCTGCTGATAGTCCTAACACTGATGGAATTGACATTTCTTCTTCCAAAAATATCTTCATAAAAGATTCCAACATAGCTTCTGGTGATGACTGCATTGCAATCATAGGTGACTCGTCTTACATTAATGCCACTGGAATTGCTTGTGGACCAGGCCATGGAATAAGCATTGGTAGCCTGGGTAGAAACAATGACAACGTGGAACAAGTTCGTGTATATAATAGCAGCTTCACGAAAACTACAAATGGAGCAAGAATCAAGACATTTTCGGGTGGATCAGGTTATGCGAAAAGAATCACATTTGAGAAAATCACATTAAACCAAGTTTACAACCCAATAATTATAGATCAACACTATAATGACATAATGTTACTTTTTGAATATGGCATGATTAGAATGGAGGAGGAGGAGTCCAACTGA 990 0.3788 MQRLITRVLIVSFISQCLCDMSMVEFKNTIYDVRNYGANGNGKSDDSKALMDAWNDICGRQGTPTLLIPQNRVFLVKRNIIMKGPCKATNINIQLQGKIVASQKNAWQGDKSTVIYFTNINGLRIVGKGGLIDGFGSSWWPCKNCQRPAVLGFNACNGLSVSYLRITNSPQAHITINECDGAIFSHISIRSPADSPNTDGIDISSSKNIFIKDSNIASGDDCIAIIGDSSYINATGIACGPGHGISIGSLGRNNDNVEQVRVYNSSFTKTTNGARIKTFSGGSGYAKRITFEKITLNQVYNPIIIDQHYNDIMLLFEYGMIRMEEEESN 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01380 329 PANTHER - 28 310 - -
Vian9g01380 329 Pfam Glycosyl hydrolases family 28 58 311 IPR000743 GO:0004650|GO:0005975
Vian9g01380 329 ProSitePatterns Polygalacturonase active site. 236 249 IPR000743 GO:0004650|GO:0005975
Vian9g01380 329 Gene3D - 22 314 IPR012334 -
Vian9g01380 329 SUPERFAMILY Pectin lyase-like 23 311 IPR011050 -
Vian9g01380 329 SMART pbh1 179 205 IPR006626 -
Vian9g01380 329 SMART pbh1 286 307 IPR006626 -
Vian9g01380 329 SMART pbh1 257 278 IPR006626 -
Vian9g01380 329 SMART pbh1 206 227 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01380 Vian-Chr9 29294004 29296986 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01380 28 311 Glycoside Hydrolase AT5G17200 48.252 2.84e-83 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01380 K01184 - gmx:121174629 399.053