Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01854 ATGCAAAGATTAATCACTTGTCTTTTGATTCTTGGTTTTGTTCCACCATGTTTGTGTGTGAGGTGGAGTGTTAGAACCCAAAACAAAACATATAATGTGATAGATTATGGTGCTCATGGTGATGGAAAATTAGATGATTCTAGGGCTTTTGTGAGTGCATGGAAAGACACATGTGCAACACAAGGGAGACCAACTCTTCTTATACCACAAAATGGAGTTTTCTTGCTGAAAGGCATAGCCCTCAATGGTCCTTGCAACGCCACAAATGTTAATATTAAGCTTCAAGGGAAAATAGTTGCCCCTACCAAGGATGAATGGCTAAAAGTTATCACAAGTAATTTGATTCTATTCTCAAACGTAAATGGTCTCTCAATTGATGGAAGTGGAGGATCAATCGAGGGCAATGGTTCTTCTTGGTGGCAATGCATAAGTTGTGGACGACCAACGATTCTTAGATTCAAATTTTGTAATGATCTTACTGCTAGAAATCTGAACATCACTAACAGCCCAAAAGCTCACATAAGGATAAATAACTGTGAGAATGCCACATTCTCTAATATCAGCATTCATTCTCCTGGTGACAGCGCCAACACTGATGGAATTGACATTTTTACTTCCAAAAATATCTTGATTCAAGATTCCACCATACACTGTGGTGATGATTGTATTGCCATCAGTGGTGGCTCCTCTCACATCAATGCTACTGGAATTGCTTGTGGACCAGGCCATGGAATAAGCATTGGAAGCCTGGGTAGAGACGAATCTTATGAAACAGTGGAAGAAGTTTATGTAAAAAACTGCAGCTTCACCAACACTACAAATGGAGCAAGAATCAAGACAGCACCAGGTGGATCAGGTTATGCAAGAAACATCACTTTTGAGGACATCACACTAATGCAGGCTCAGAATCCAATAATTATAGACCAGTACTACCCCAAGAAAAATTCAACGACTAAAGCATTGAACGTGAGTGATGTGACATTCCGTGGATTCAATGGAACATCTGCAACTGATGAAGCTATTACCTTGAATTGCTCACTACCTGGTTGTTTCAACATTGTGTTGGATGATATTGACATTGTCTCATCTGAGTCAGGAAAACCAGTTTCTTGTTCTTGCAACAATGCCCATGGAACTGTTACATCTACCCATCCAAATTGTTCTTTATCATCATCCATTATGTCACCCTCACACATATATAAGAAAAGTAATATGTAG 1218 0.3933 MQRLITCLLILGFVPPCLCVRWSVRTQNKTYNVIDYGAHGDGKLDDSRAFVSAWKDTCATQGRPTLLIPQNGVFLLKGIALNGPCNATNVNIKLQGKIVAPTKDEWLKVITSNLILFSNVNGLSIDGSGGSIEGNGSSWWQCISCGRPTILRFKFCNDLTARNLNITNSPKAHIRINNCENATFSNISIHSPGDSANTDGIDIFTSKNILIQDSTIHCGDDCIAISGGSSHINATGIACGPGHGISIGSLGRDESYETVEEVYVKNCSFTNTTNGARIKTAPGGSGYARNITFEDITLMQAQNPIIIDQYYPKKNSTTKALNVSDVTFRGFNGTSATDEAITLNCSLPGCFNIVLDDIDIVSSESGKPVSCSCNNAHGTVTSTHPNCSLSSSIMSPSHIYKKSNM 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01854 405 PANTHER - 28 379 - -
Phco1g01854 405 SMART pbh1 323 345 IPR006626 -
Phco1g01854 405 SMART pbh1 206 227 IPR006626 -
Phco1g01854 405 SMART pbh1 288 309 IPR006626 -
Phco1g01854 405 SMART pbh1 259 280 IPR006626 -
Phco1g01854 405 SMART pbh1 179 205 IPR006626 -
Phco1g01854 405 Pfam Glycosyl hydrolases family 28 58 377 IPR000743 GO:0004650|GO:0005975
Phco1g01854 405 ProSitePatterns Polygalacturonase active site. 236 249 IPR000743 GO:0004650|GO:0005975
Phco1g01854 405 Gene3D - 18 404 IPR012334 -
Phco1g01854 405 SUPERFAMILY Pectin lyase-like 20 387 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01854 Phco-Chr1 58124600 58128088 Dispersed/Tandem