Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0211 ATGAAATATGGTGCACGTGGTGATGGCAAAATTGATGATTCACTGGCATTTGTCAGGGCATGGAATAGTGCGTGTAAAGCAGCAGAGATGTCAACACTGGTTATACCAGTAGGAAAAACATTTATGGTGTCGAAACTAAGTTTTAACGGTCCTTGCACCAACAAACATATTCTTATTCAGCTTGAAGGGAAAATAGTTGCACCTTCTAAGGTACATTGGAAAGCTCAGTCATATTGGATTACCGTGCAATCTGTAGAAGGACTCACAATTAATGGTCATGGTCGAGGAGTACTCGATGGAGATGGTTCGACTTGGTGGCAATGCAAATCATGTGATCGACCTGGGGTCTTCTTGTTTCATTCATGCAAGGGTCTCAATGTTAGTAATCTGAGTATCACTAATAGTCCACGTTCCCATGTAGCTGTTAATATGTGCAATGGTGCAACATTTTCTAATATATCTATTAATTCACCTGGTACTAGCCCCAATACTGATGGGTTTGACATTGCTTTATCCACTCATATTGTGATACATGATTCCAACATAAAATCTGGTGATGATTGTATTGCCATCAATGGTGGCTCCTCTTTTGTCAATGCTACAAGGATTACTTGTGGACCTGGCCATGGAATAAGTGTTGGAAGCCTTGGTAAAAAGGGATCTGAGGATAAAGTTTCTAATATTCATGTGCGGAATTGCACATTCAATGAAACTCAAAATGGAGCACGAATCAAGACAATTCCTGGTGGATTAGGTTATGCAAAACATATTACATTTGAGCAAATCATCCTTGTTAATGTTAACAACCCAATAATTATAGATCAGGAATATAGTATTAGTCACAAGGGTGCAAATGTGTCGGTGAGTTCAGTGAAATTTCAAGGATTTACCGGAACTTCTGCTAGCGGCTTAGCTATTCAGTTAAATTGTAGCTCTTCTGGTTGTTATGACATTTTATTGGAACAAAACAACATTGTTTCTGCTCAACCAGGAAAGAAGGCTTCTTCTTTTTGTACAAATGCCCATGGAACTGCTAGAAATACTGTTCCAAATGTCCCTTGCTTATTAAAGTAA 1074 0.3873 MKYGARGDGKIDDSLAFVRAWNSACKAAEMSTLVIPVGKTFMVSKLSFNGPCTNKHILIQLEGKIVAPSKVHWKAQSYWITVQSVEGLTINGHGRGVLDGDGSTWWQCKSCDRPGVFLFHSCKGLNVSNLSITNSPRSHVAVNMCNGATFSNISINSPGTSPNTDGFDIALSTHIVIHDSNIKSGDDCIAINGGSSFVNATRITCGPGHGISVGSLGKKGSEDKVSNIHVRNCTFNETQNGARIKTIPGGLGYAKHITFEQIILVNVNNPIIIDQEYSISHKGANVSVSSVKFQGFTGTSASGLAIQLNCSSSGCYDILLEQNNIVSAQPGKKASSFCTNAHGTARNTVPNVPCLLK* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0211 357 Pfam Glycosyl hydrolases family 28 25 343 IPR000743 GO:0004650|GO:0005975
Mtr8g0211 357 SMART pbh1 283 308 IPR006626 -
Mtr8g0211 357 SMART pbh1 254 275 IPR006626 -
Mtr8g0211 357 SMART pbh1 172 193 IPR006626 -
Mtr8g0211 357 SMART pbh1 225 246 IPR006626 -
Mtr8g0211 357 SMART pbh1 145 171 IPR006626 -
Mtr8g0211 357 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 355 - -
Mtr8g0211 357 ProSitePatterns Polygalacturonase active site. 202 215 IPR000743 GO:0004650|GO:0005975
Mtr8g0211 357 Gene3D - 1 353 IPR012334 -
Mtr8g0211 357 SUPERFAMILY Pectin lyase-like 2 355 IPR011050 -
Mtr8g0211 357 PANTHER - 1 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0211 Mtr-Chr8 2415419 2419526 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0211 1 347 Glycoside Hydrolase AT5G27530 44.972 1.09e-97 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0211 K01184 - gmx:100801217 405.601