Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0247 ATGCAAGTCCTAATCACTTGTGTTTTGATTCTTGGTTTTTTTTCACCTTGTCTATGTCAAAGGTGGAATCTAGTTGGAACGAAAAATAATACGTTTAATGTGATGGAATATGGTGCTCGTGGTGATGGCAAATCTGATGATTCACATGCATTTTTAAGTGCATGGAATAAGACATGTGGAGCAGAAGGGGAAGCAACACTAGTTATACCACCAAAACAATTATTCTTAGTGACGAACTTAATATTCAGCGGTGCTTGCAAGGCCACAAATATTCACATTAAGCTTCAAGGTAAAATAGTTGCACCTTCTAAGAACTCATGGAAAGATGGGTCATATTGGATTAGGATCGAATATGTAAACGGTCTCACAATTGATGGAACAGGAGGAGGAATTGACGGCTATGGTTCTACATGGTGGTCATGCAAAAGTTGCATTCGACCTACGATCTTGTCTTTCCATTCTTGTAATGATCTTAGTGTTAGTAGACTATCGATCACTAATAGCCCAGGAGCTCACATAGCCATAAATGGTTGCTACGGTGCAAAATTCTCCAATTTAGTAGTTCATTCTCCTTCTGATAGCCCCAACACCGATGGATTTGACATTTCTGCCTCTAAGAATATCTTGATAGAAGATTCAACCATTCAAACAGGTGATGATTGTATTGCCATCAATGGTGGCTCATCCTACATCAATGCTACCCGTGTTGCTTGTGGACCTGGTCATGGGATAAGCATTGGCAGCCTTGGTAGAGGTAATTCTTATGAGACAGTTGAAGAGATTCATGTACAAAATTGCAACTTCATTAACACTACAAATGGGGCAAGAATCAAGACATTTCCTGGTGGATCGGGTTATGCAAGAAAGATTACTTTTGAGCAAATCCAACTTAAAAATGTTAACAACGCGATAATTGTAGACCAACACTATGGTGTTCAAGTTGCAACGGATTCAGCCGTGCAAGTGAGTGATGTGATATATCGTGGATTTAATGGAACTTGTGCCGGTGATATTGCTATTGATTTGGATTGCATGGGTTGTTTCAACATTGTATTGGATCAAATTCACATTGTCCCTTCTCAAAGTAGAAATAACGTTTCTGCTTTTTGCAGAAATTTTCATGGAACAATTGATGATTCCACTGTTCCAAGGGTCTCTTGCAAATAA 1167 0.3899 MQVLITCVLILGFFSPCLCQRWNLVGTKNNTFNVMEYGARGDGKSDDSHAFLSAWNKTCGAEGEATLVIPPKQLFLVTNLIFSGACKATNIHIKLQGKIVAPSKNSWKDGSYWIRIEYVNGLTIDGTGGGIDGYGSTWWSCKSCIRPTILSFHSCNDLSVSRLSITNSPGAHIAINGCYGAKFSNLVVHSPSDSPNTDGFDISASKNILIEDSTIQTGDDCIAINGGSSYINATRVACGPGHGISIGSLGRGNSYETVEEIHVQNCNFINTTNGARIKTFPGGSGYARKITFEQIQLKNVNNAIIVDQHYGVQVATDSAVQVSDVIYRGFNGTCAGDIAIDLDCMGCFNIVLDQIHIVPSQSRNNVSAFCRNFHGTIDDSTVPRVSCK* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0247 388 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 384 - -
Mal5g0247 388 PANTHER - 1 384 - -
Mal5g0247 388 Gene3D - 25 386 IPR012334 -
Mal5g0247 388 SMART pbh1 287 308 IPR006626 -
Mal5g0247 388 SMART pbh1 258 279 IPR006626 -
Mal5g0247 388 SMART pbh1 205 226 IPR006626 -
Mal5g0247 388 SMART pbh1 178 204 IPR006626 -
Mal5g0247 388 ProSitePatterns Polygalacturonase active site. 235 248 IPR000743 GO:0004650|GO:0005975
Mal5g0247 388 Pfam Glycosyl hydrolases family 28 59 366 IPR000743 GO:0004650|GO:0005975
Mal5g0247 388 SUPERFAMILY Pectin lyase-like 27 387 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0247 Mal-Chr5 4128769 4132745 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0247 32 384 Glycoside Hydrolase AT5G27530 46.429 1.22e-95 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0247 K01184 - gmx:100820332 458.373