Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00343 ATGGTGCTAAGGGAGATGGGAAATCGGATGATGCACAGGATATTTGTTGTGAATTGGTGGCAGGCATTTTTAAAAGCTTGGGAAAGCAGTTGTGGAGCAAAAGGTATGGCAACTCTAGTCATACCTGCAAATTATCAATTCCTTCTCTCACCCTTAATGCTAAAGGGTCCTTGCCTTGCCTCAACTATTCAAATTCAGCTTCAGGGGAAACTAGTTGCAGCAGAGAAGAACGCATGGCCATCATATAAGTATGCTTGGATTTTGATCTCAAATGTAAATGGTCTCACAGTTGATGGAACTGGAGGATCACTCGATGGCTTCGGTTCTTCATGGTGGTCATGCACAAACTGTCAACGACCATCGGCCATTACTTTCAACTCGTGCAATGGTCTTACTGTTAACTACTTAAACATCATTAACAGTCCAAAAGCTCACATAAACATAAACAATTGTGTGGGAGCCACATTTTCTGGAATCACTATTCAGTCTCCTGCTGACACTCACAACACTGATGGAATTGATGTTTATGCTTCAAAAAACATCTGGATCAAAGATTCTACTATAGCATGTGGTGATGATTGCATTGCGATCAGTGGTGGCTCCTCTTATGTCAATGTTACTGGGTGTGCTTGTGGACCAGGCCATGGAATAAGCGTTGGGAGCCTGGGAAATGGCAAAAGTAACACAGTGGAACAAGTTCAAGTACGAAATTGTAACTTCACAAACACGCAGAATGGAGCAAGAATTAAGACATATGCGGGTGGATCAGGTTATGCAAGAGGAATCACATTTCAGGAAATTAATTTGATACAAACTCGAAACCCAATAATTATTAACCAATTCTACACTAACACAACTCAATCTTTAAAGAATGGAGGAGTTGAAGTGAGTGGAATCACATTTCGTGGATTTCGTGGAACAAGTATGACTAATGCAGCTATTACATTGAATTGTGGTCCACAAGGTTGTTTCAACATTGTATTGGATCGAAATAACATCGTCTCTTCTCAACAAGGAAAACCAGCTTCTTGTTCCTGCAAAAATGCCCATGGAACAATTACATCTTCTCTTCCAAATTGTTCTTGCTTATTGCCATGA 1098 0.4053 MVLREMGNRMMHRIFVVNWWQAFLKAWESSCGAKGMATLVIPANYQFLLSPLMLKGPCLASTIQIQLQGKLVAAEKNAWPSYKYAWILISNVNGLTVDGTGGSLDGFGSSWWSCTNCQRPSAITFNSCNGLTVNYLNIINSPKAHININNCVGATFSGITIQSPADTHNTDGIDVYASKNIWIKDSTIACGDDCIAISGGSSYVNVTGCACGPGHGISVGSLGNGKSNTVEQVQVRNCNFTNTQNGARIKTYAGGSGYARGITFQEINLIQTRNPIIINQFYTNTTQSLKNGGVEVSGITFRGFRGTSMTNAAITLNCGPQGCFNIVLDRNNIVSSQQGKPASCSCKNAHGTITSSLPNCSCLLP 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00343 365 ProSitePatterns Polygalacturonase active site. 208 221 IPR000743 GO:0004650|GO:0005975
Viun10g00343 365 PANTHER - 21 352 - -
Viun10g00343 365 Gene3D - 18 361 IPR012334 -
Viun10g00343 365 Pfam Glycosyl hydrolases family 28 31 350 IPR000743 GO:0004650|GO:0005975
Viun10g00343 365 SUPERFAMILY Pectin lyase-like 19 363 IPR011050 -
Viun10g00343 365 SMART pbh1 230 251 IPR006626 -
Viun10g00343 365 SMART pbh1 178 199 IPR006626 -
Viun10g00343 365 SMART pbh1 151 177 IPR006626 -
Viun10g00343 365 SMART pbh1 201 221 IPR006626 -
Viun10g00343 365 SMART pbh1 291 318 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00343 Viun-Chr10 2822066 2826172 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00343 21 360 Glycoside Hydrolase AT5G17200 44.110 8.33e-98 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00343 K01184 - gmx:100801217 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g00343 10 2822066 2826172 Viun10g00343 10 2822066 2826172 ECH