Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03291 ATGCAAGGCTTCTTCACTTATATTTTGATTTTTAGTTTTGTTTCACCTTGTCAATGTATAAGGTTGAATTTTGGAACTGAAAATGCATTTTATAATGTGATTTTATTTGGTGCTCGTGGAGATGGCAGATCTGACGATTCACAAGCATTTGCCAATGCATGGCATAGTGGCTGTAAAGCAGGTGGAATGTCAACACTAGTTATACCAGCGGGACGATTATTTATGGTCACCAAAATTAACTTTACTGGTCCTTGTAAAGCCAAAATGAATATTCAGCTTCAAGGGCAAATAGTTGCACCTCCCAAAGTAGCATGGAAAGCTGGGAACTATTGGATTAGCGTTGAATATGTAAACGGACTCACAATTGATGGCAATGGTAAAGGAGGATTCGATGGAGATGGTTCTACTTGGTGGGAATGTAGAAATTGCTATCGACCTAGGATGTTATTTTTCCATGCATGCAATGGTCTTACAGTTCGTAACTTAAGAATCTCTAATAGTCCAGCATCTCATGTCGCCATAAATATGTGCAATGGTGCAACATTATCTCATATATTCATTCATTCTCCTTCTAATAGCCCCAATACTGATGGCTTTGACATCTCTTATTCTAGCAATATCTTGATACAAGATTCCAATATAAAATCTGGTGATGATTGTATTGCCGTCAATGGTGGTTCTATTTTTATCAATGCTACTAGAGTTATATGTGGACCAGGCCATGGGATAAGTGTTGGTAGCCTTGGTAGAAATGGAGTTCGTGAGACAGTTTCAAATGTACACGTACTAAATTGCACTTTTATTAGGACTTCAAATGGAGCACGAATCAAGACAATTCCGGGAGGATCCGGCTATGCAAAACAGATTACATTTGATCAAATAATCCTTGAAAATGTTATGAACCCGATAATTATAGATCAAGAGTACAGTCTTACTCGGGCTACAAATGTGCAAGTGAGCTTTGTGACATATAGAGGATTTAGAGGAACTTCTGCTAGTGATGTCGCTATCAACTTAGTTTGTGGGCCCTCGACAGGTTGTTTCAACATTGTATTTGATCAAAATAATATTGTATCTGCTAAACCAAGAGGGAAAACTTCATCTACCTGTAGGAATGCCCATGGAACAGCTAGAAATACTATTCCATATGTCCCTTGCCTACTGAAATAA 1170 0.3803 MQGFFTYILIFSFVSPCQCIRLNFGTENAFYNVILFGARGDGRSDDSQAFANAWHSGCKAGGMSTLVIPAGRLFMVTKINFTGPCKAKMNIQLQGQIVAPPKVAWKAGNYWISVEYVNGLTIDGNGKGGFDGDGSTWWECRNCYRPRMLFFHACNGLTVRNLRISNSPASHVAINMCNGATLSHIFIHSPSNSPNTDGFDISYSSNILIQDSNIKSGDDCIAVNGGSIFINATRVICGPGHGISVGSLGRNGVRETVSNVHVLNCTFIRTSNGARIKTIPGGSGYAKQITFDQIILENVMNPIIIDQEYSLTRATNVQVSFVTYRGFRGTSASDVAINLVCGPSTGCFNIVFDQNNIVSAKPRGKTSSTCRNAHGTARNTIPYVPCLLK 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03291 389 Pfam Glycosyl hydrolases family 28 58 375 IPR000743 GO:0004650|GO:0005975
Car07g03291 389 Gene3D - 19 384 IPR012334 -
Car07g03291 389 SMART pbh1 257 278 IPR006626 -
Car07g03291 389 SMART pbh1 204 225 IPR006626 -
Car07g03291 389 SMART pbh1 154 203 IPR006626 -
Car07g03291 389 ProSitePatterns Polygalacturonase active site. 234 247 IPR000743 GO:0004650|GO:0005975
Car07g03291 389 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 387 - -
Car07g03291 389 PANTHER - 1 387 - -
Car07g03291 389 SUPERFAMILY Pectin lyase-like 26 387 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03291 Car-Chr7 60661758 60667202 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g03291 4 376 Glycoside Hydrolase AT5G17200 42.195 3.34e-97 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03291 K01184 - gmx:100820332 427.172