Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00337 ATGCAAAGGTTAATGAGTGGTATATTGATTCTAGGTTTTGTTTCAGCCACATTGTGTCTGAGCAGCAATGCTGAAACCAAAGTCAAATATTTTAATGTGATGGATTATGGAGCTCATGCTGATGGCCAAACTGATGATTCAAATGCAATTTCAAAAGCATGGCAAGGTGTGTGTGGAGAGGAAGGGCCAGCAACTCTATTGATACCTTCAAGCAAAATATTTTTGGTGAAAAGATTAAACCTAAGTGGTCCATGCAAGGCTCCAAATGTTGGCATTAAGTTTGAAGGGAAGATAGTTGCTCCATCAATGAATGAATGGGTTGGTGATTCGTTCAGTTGGATTCAGATATTACACGTAAATGGTCTAACAATTGATGCTGATGGAGGAATCATTGATGGCAATGGTTCTACTTGGTGGGAGAAATGCAGAAATTGTACACGACCAATATCTTTACTTTTCCAATCTTGTAATGGTCTTACTGTGAAATCTCTGAGAATGAGGAACAGTCCTGGATTTCACATATCTGTATATGGCAGCAATGGTGCATTATTCACTCAAATCAATATCAATTCTCCTCGGAAAAGTCCTAACACGGATGGCATTGATATATTTTCCTCTAAAAATATAGCAATTGAAGATTCTACTCTGGCAACAGGTGATGATTGTATTGCCATTAAAGGTGGCAGTTCATACATCAATGCAACTAGAATTTTTTGCCAAGGAGGCCATGGGATAAGCATTGGAAGCCTTGGTATAAACAAATCCTATGAGACAGTTGAAGAGGTACATGTACAAAATTGCAGCTTCATTGGAACTACAAATGGAGCAAGAATCAAGACATGGCCAGGTGGATCAGGCTATGCTTTTTGCAAGAACATTGTTAATGGAACGATTGAAAACACCGTTCCAAAAGTTTCTTGTGTATAA 927 0.384 MQRLMSGILILGFVSATLCLSSNAETKVKYFNVMDYGAHADGQTDDSNAISKAWQGVCGEEGPATLLIPSSKIFLVKRLNLSGPCKAPNVGIKFEGKIVAPSMNEWVGDSFSWIQILHVNGLTIDADGGIIDGNGSTWWEKCRNCTRPISLLFQSCNGLTVKSLRMRNSPGFHISVYGSNGALFTQININSPRKSPNTDGIDIFSSKNIAIEDSTLATGDDCIAIKGGSSYINATRIFCQGGHGISIGSLGINKSYETVEEVHVQNCSFIGTTNGARIKTWPGGSGYAFCKNIVNGTIENTVPKVSCV 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00337 308 ProSitePatterns Polygalacturonase active site. 236 249 IPR000743 GO:0004650|GO:0005975
Viun10g00337 308 Gene3D - 14 303 IPR012334 -
Viun10g00337 308 Pfam Glycosyl hydrolases family 28 58 287 IPR000743 GO:0004650|GO:0005975
Viun10g00337 308 PANTHER - 29 293 - -
Viun10g00337 308 SMART pbh1 179 205 IPR006626 -
Viun10g00337 308 SMART pbh1 156 176 IPR006626 -
Viun10g00337 308 SMART pbh1 259 280 IPR006626 -
Viun10g00337 308 SMART pbh1 206 227 IPR006626 -
Viun10g00337 308 SUPERFAMILY Pectin lyase-like 18 288 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00337 Viun-Chr10 2759612 2765062 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00337 1 288 Glycoside Hydrolase AT5G17200 43.581 1.35e-76 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00337 K01184 - gmx:121174629 317.775