Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0821 ATGGCAACTCTGGTCATACCTGCAAACTATCGATTCCTTCTGTCACCCTTAATGCTAAAGGGTCCTTGCCATGCCTCAAATATTCAAATTCAGATTCAAGGGAAAGTAATTGCAGCTGAGAAGAATGCATGGGCATCATATAAGTATACTTGGATTTTGATCTCAAATGTAAATGGTCTGACAGTGGATGGAAGTGGAGGATCGCTGGATGGCTTCGGTTCTTCATGGTGGTCATGCAGAAACTGTCAACGTCCATCGGTCATTACTTTCAATTCATGCAATGGTCTTAGTGTTAGCTCCTTGAACATCATTAACAGTCCAAAAGCTCACATAAACATAAACAATTGTGTGGGAGCCACATTCTCTGCTATCAGTATTCAGTCTCCCGGTGACACTCACAACACTGATGGAATTGATGTTTATGCTTCAAAAAATATCTGGATCAAAGATTCTACTATTGCATGTGGTGATGATTGCATTGCGATCAGTGGTGGCTCTTCTTATGTCAATGTTACTGGGACTGCCTGTGGACCAGGCCATGGAATAAGTGTTGGGAGCTTGGGAAATGGCAATAGTAACACAGTGGAACAAGTTCATGTACAAAATTGTAACTTCACCAACACACAAAATGGAGCAAGAATTAAGACATATGCGGATGGATCAGGTTATGCAAGAGGAATCACATTTGAGGAAATTACATTGATACAAGCTCGAAACCCAATAATTATTGACCAATTCTACACTAACAAAGGCGTATCTTTAAAGAATGGAGGAGTTGAAGTGAGAGGAATAACATTTCGTGGATTTCATGGAACAAGTATGACTGGTGAAGCTATTACCTTAAATTGTGGTCCACAAGGTTGTTTCAACATTACATTGGATCAAATTAACATTGCCTCTTCTCAACAAGGAAAACCAGCTTCCTGTTCTTGCAAAAATGCCCACGGAACAGCCACATCTTCTGTTCCAAATTGTCCTTCCTTATTGCCATGA 993 0.4038 MATLVIPANYRFLLSPLMLKGPCHASNIQIQIQGKVIAAEKNAWASYKYTWILISNVNGLTVDGSGGSLDGFGSSWWSCRNCQRPSVITFNSCNGLSVSSLNIINSPKAHININNCVGATFSAISIQSPGDTHNTDGIDVYASKNIWIKDSTIACGDDCIAISGGSSYVNVTGTACGPGHGISVGSLGNGNSNTVEQVHVQNCNFTNTQNGARIKTYADGSGYARGITFEEITLIQARNPIIIDQFYTNKGVSLKNGGVEVRGITFRGFHGTSMTGEAITLNCGPQGCFNITLDQINIASSQQGKPASCSCKNAHGTATSSVPNCPSLLP* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0821 330 ProSitePatterns Polygalacturonase active site. 173 186 IPR000743 GO:0004650|GO:0005975
Vra9g0821 330 PANTHER - 1 325 - -
Vra9g0821 330 SMART pbh1 195 216 IPR006626 -
Vra9g0821 330 SMART pbh1 224 245 IPR006626 -
Vra9g0821 330 SMART pbh1 256 283 IPR006626 -
Vra9g0821 330 SMART pbh1 143 164 IPR006626 -
Vra9g0821 330 SMART pbh1 116 142 IPR006626 -
Vra9g0821 330 SUPERFAMILY Pectin lyase-like 2 327 IPR011050 -
Vra9g0821 330 Pfam Glycosyl hydrolases family 28 3 317 IPR000743 GO:0004650|GO:0005975
Vra9g0821 330 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 325 - -
Vra9g0821 330 Gene3D - 2 326 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0821 Vra-Chr9 9583775 9586564 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0821 4 325 Glycoside Hydrolase AT5G17200 44.380 3.69e-91 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0821 K01184 - gmx:100801217 447.203