Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00174 ATGCAAGTGTTAATCACTTCGGTTTttattctttgtattttttcacCTTGTCTATGTGAGAATTTAGttagaacaaaaaataatatatttaatgtgATGGAATATGGAGCTCGTGGTGATGGCAAATCTGATGATTCACATGCATTTTTAAGGGCTTGGAAAAGTACATGTGAATCAGAAGGAGCAGCAACACTGATTATACCACCAAATAAAATATTCCTGTTGACAAACTTATTATTTAGCGGTGCTTGCAAAGCTAAAAGTATTCACATTAAGCTTCAAGGAAAAATAGTTGCCCCTCCGAAGGAAGCATGGAAGGACAATTCACATTGGATTAGTATCCAATATGTAAACGGTCTCACAATTGATGGCACGAGAGCAGGAGGAATCGACGGCTATGGTTCTACTTGGTGGCATTGTAAAAGTTGCTCTCGACCCACAATCTTGCATTTTCATTCCTGCAAGGATCTTAGtgttaaaaacataaagatCACTAATAGCCCGAGATCTCATATATCAGTTAATAATTGTATTGGTGCAACATTTTCTCAAATATCAATTGATTCTCCTGCTACAAGCCCCAACACTGATGGCTTTGACATTTCTTTTTCTAAGAATATCTTGATAAAAGATTCCAACATAAAATCTGGTAgtgATGACTGTATTGCCATCAATGGTGgttctttttttatcaatgcCACTGGAATTACTTGTGGACCAGGCCATGGGATAag 734 0.3392 MQVLITSVFILCIFSPCLCENLVRTKNNIFNVMEYGARGDGKSDDSHAFLRAWKSTCESEGAATLIIPPNKIFLLTNLLFSGACKAKSIHIKLQGKIVAPPKEAWKDNSHWISIQYVNGLTIDGTRAGGIDGYGSTWWHCKSCSRPTILHFHSCKDLSVKNIKITNSPRSHISVNNCIGATFSQISIDSPATSPNTDGFDISFSKNILIKDSNIKSGSDDCIAINGGSFFINATGITCGPGHGI 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00174 244 Gene3D - 20 244 IPR012334 -
Tsu08g00174 244 Pfam Glycosyl hydrolases family 28 57 244 IPR000743 GO:0004650|GO:0005975
Tsu08g00174 244 PANTHER - 1 244 - -
Tsu08g00174 244 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 244 - -
Tsu08g00174 244 SUPERFAMILY Pectin lyase-like 17 244 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00174 Tsu-Chr8 1616773 1629423 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00174 1 244 Glycoside Hydrolase AT5G44840 43.600 3.40e-62 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00174 K01184 - gmx:121174629 305.449