Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0712 ATGGTTGGAACCCAAAACATATTTCATAATGTGATAGACTATGGTGCTCATAACGATGGAAAATCTGACGATTCACAGGCAATTTTAAGTGCATGGCAGCGTATGTGTGGAGCAGAAGGGCCGGCAACTCTAGTCATACCTtcaggaaaaatatttttggtgacAAGATTAAAGCTGAAAGGTCCTTGCAAGGCCCCAAGTGTTCGGATTAAGTTTGTAGGGAAAATAGTTCCACCTGCTATGGATGCATGGGCTGGTGATAGGTCAAGTTGGATTGTGATCTCATATGTAAACGGTCTAAAAATTGATGCCAGCGGAGGAATTAATATTGATGGCTATGGTTCTACTTGGTGGGAGAAATGCAGAGGTTGTCAACGGCCAACaGTCTTACGTTTCCATGCTTGTAATGGTCTTTTTGTCAATTCACTGAGAATGACTAATAGCCCTGGAGCTCACATATCTGTAAATGGTTGCGACGGTGCAAGATTCTctcaaatcaatattaatgcTCCTCAGGACAGTCCCAACACTGATGGGTTTGATATTGCTAGttccaaaaatatattgatagaaGATTCTACTATAGGAACCGGTGATGATTGTATTGCCATCAATGGTGGCTCCTCTTACATCTATGCTACTAGGGTTGTTTGTGGACCAGGCCATGGGATAAGCATTGGCAGCCTTGGTAAAAATAAATCTCACGAGATAGTTGAAGAGGTTTATGTACGGAATTGCAGCTTCATTGGGACTACAAATGGAGCAAGAATCAAGACATGGCCGGGTGGATCAGGCTATGCAAGAAAAATCACATTTGAGCAAATCAAACTAAGAGAGACTCAGAATCCAATAATTATAGACCAAAACTATGGCATCAAAAGCCCAAATCCTACGgataaagCAGTCAAGGTGACTGAAGTGACTTATCGTGGATTTGATGGAACTTCTGCTGATGGCAAGGCTATTGACTTAAAATGTAGCACATCGGGTTGTTTCAACATTACATTGGATCAAATTCACATTCTCTCTTCCCAACCAAGCAAACCAACCTATGCTTCTTGCAAGAATGCTCATGGAACGGTGGGATATACTGTTCCAAAAGTCTCTTGCTTATCAAAATGCATTCCTACCACCCTCGGTGTTAGTGGGTCTAGTGACCCATCCCAAATGAAGGAGCTTGAAGCCTTGGGCTTTGTTAGTCCCTAG 1206 0.4055 MVGTQNIFHNVIDYGAHNDGKSDDSQAILSAWQRMCGAEGPATLVIPSGKIFLVTRLKLKGPCKAPSVRIKFVGKIVPPAMDAWAGDRSSWIVISYVNGLKIDASGGINIDGYGSTWWEKCRGCQRPTVLRFHACNGLFVNSLRMTNSPGAHISVNGCDGARFSQININAPQDSPNTDGFDIASSKNILIEDSTIGTGDDCIAINGGSSYIYATRVVCGPGHGISIGSLGKNKSHEIVEEVYVRNCSFIGTTNGARIKTWPGGSGYARKITFEQIKLRETQNPIIIDQNYGIKSPNPTDKAVKVTEVTYRGFDGTSADGKAIDLKCSTSGCFNITLDQIHILSSQPSKPTYASCKNAHGTVGYTVPKVSCLSKCIPTTLGVSGSSDPSQMKELEALGFVSP 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0712 401 Gene3D - 3 390 IPR012334 -
Ssu2g0712 401 PANTHER - 3 371 - -
Ssu2g0712 401 Pfam Glycosyl hydrolases family 28 36 358 IPR000743 GO:0004650|GO:0005975
Ssu2g0712 401 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 3 371 - -
Ssu2g0712 401 SUPERFAMILY Pectin lyase-like 6 373 IPR011050 -
Ssu2g0712 401 ProSitePatterns Polygalacturonase active site. 215 228 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0712 Ssu-Chr2 38758530 38772127 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0712 8 359 Glycoside Hydrolase AT5G27530 48.045 7.24e-101 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0712 K01184 - gmx:100820332 454.907