Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0187 ATGGAAATTGATTTAGCAAACCTAAACACTATTATCCAGTCCTTCAGTCAATCGCAAAAGACAATAAGTCTTCCTGATAAAACAGAGAAAGCTATTAGCCTTCAAAAGGGTAAAACCTCAAATACCAATCATTACATGGCAAAAGGAAAATTCTCCTCTGTCATCCAAATGGAACCCGAATTTTGGGACAAAAATCCATACAAAGCCATCACCAAAGCATTCCCTCCTGGTTTTCATTTTAGACCATATGCCTTGAATAAGACTAGACAATTTTATGAGTTCATTTTAATAGATTCAGATTCTGCCTTGCGTTTCCATGGTTGTAATGGTCTTACAGTAAAATATCTAAGGAATATCAACGGCCCTGGATCTCACATATCTGTGAATGGTTGCGAGGGTGCAAAATTCTCTCAAATCAATATTCATGCTCCTCAAGAGAGTCCCAACACTGATGGATTCGACATTTCCGCTTCCAAAAATATCTTGATACAAGATTCTACTATAGGAACTGGTGATGATTGTATTGCCATCAACGGTGGCTCCTCTTACATATCTATTGTTGGGGTTGCTTGTGGACCAGGCCATGGAATAAGTATTGGCAGCCTTGGTAGAAATCAAGGTCATGAGACAGTTGAAGAAGTTCATGTACGAAATTGCAGCTTCACAAGGACCACAAATGGAGCAAGAATCAAGACATGGCCAGGTGGATCAGGTTATGCAAGAAGGATCATTTTTAAGCAAATAAAACTAATAGATACTCGTAATCCAATAATTATAGACCAATACTATGGACATAATATTTCAATGGATGCAGCGGTGAAAGTGAGTGATGTGATTTATCGAGGGTTTAGTGGAACTTCAAGTGATGCCAAAGCTATTGATTTACAATGTAGTAAATCAGGTTGTTTCAATATCATATTGAATCAAATCAATATAGTCTCTGCTGAACAAGGAAAACATGCCTATGCATCTTGCAAAAATGTCCATGGAATCGTTATATCTGCTATTCCAAATGTCTCTTGCTTGTTGAATTGA 1035 0.3749 MEIDLANLNTIIQSFSQSQKTISLPDKTEKAISLQKGKTSNTNHYMAKGKFSSVIQMEPEFWDKNPYKAITKAFPPGFHFRPYALNKTRQFYEFILIDSDSALRFHGCNGLTVKYLRNINGPGSHISVNGCEGAKFSQINIHAPQESPNTDGFDISASKNILIQDSTIGTGDDCIAINGGSSYISIVGVACGPGHGISIGSLGRNQGHETVEEVHVRNCSFTRTTNGARIKTWPGGSGYARRIIFKQIKLIDTRNPIIIDQYYGHNISMDAAVKVSDVIYRGFSGTSSDAKAIDLQCSKSGCFNIILNQINIVSAEQGKHAYASCKNVHGIVISAIPNVSCLLN* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0187 344 ProSitePatterns Polygalacturonase active site. 188 201 IPR000743 GO:0004650|GO:0005975
Apr10g0187 344 Gene3D - 5 340 IPR012334 -
Apr10g0187 344 Pfam Glycosyl hydrolases family 28 100 329 IPR000743 GO:0004650|GO:0005975
Apr10g0187 344 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 103 342 - -
Apr10g0187 344 PANTHER - 103 342 - -
Apr10g0187 344 SUPERFAMILY Pectin lyase-like 97 342 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0187 Apr-Chr10 4441909 4450902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0187 101 342 Glycoside Hydrolase AT3G15720 48.207 9.72e-72 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0187 K01184 - gmx:100782390 321.627