Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0393 ATGCAAACACTAATCACTTTTCTTTTGATTCTTGGTTTTGTTTCACCATGTTTGTGTGTGAGGTGGAATAATGCGAGAACCCAAAACAAAACTTATAATGTGAAAGACTATGGTGCTTATGGTGATGGCAAATATGATGATTCTGGGGCTTTTCTAAGAGCATGGAAAGACATATGTGGATCACAAGATACACCAACTCTAGTTATACCACCAAATGGAGTGTTCTTGATAAAAAGCATAACCCTAAGTGGTCCTTGCATTGCCACAAGTATTAATATTCAGCTTCAAGGGAGCATAGTTGCACCTGTGAAGAATGAATGGTTAAAAGTGTTGGGAATGCTAGACCCAATCCAAGACCCAGAACAAGATCTCACAGATCAAAGGTTCAATCTCATTGTAATCTCAAACGTTAGCCGTCTCTCACTTGATGGAACTGGAGGATCAATCGATGGCTTTGGTTCTTCTTGGTGGGATTGCAGAAATTGTGAAAGACCAACGATTCTAAGATTCAGATTCTGCAATGATCTTACTGTTAGTAATCTGAACATCAGTAACAGCCCAAAAGCTCACATAAGGATGAATAGTTGTGAGAATGCAACATTTTCTAATATCAGCATTCATTCTCCTGGTGACAGCCCCAACACTGATGGAATTGACATTTTAGCTTCCAAAAACATCTTGATTCAAGATTCCACCATGCACTGTGGTGATGATTGTATTGCCATCAGTGGTGGCTCCTCTCACATCAATGCTACTGGAATTGCTTGTGGACCAGGCCATGGAATAAGCATTGGCAGCCTGGGTAGAAACAAAGCTTATGACACAGTGGAAGAGGTTTATGTCAAAAATTGCACCTTCACAAACACTGAAAATGGAGCAAGGATTAAGACAGTCCCAGGTGGATCAGGTTATGCAAGAAACATCATTTTTGAGAACATCACAGTAATACAAGCTCAGAACCCAATAATCATAGACCAGTACTATGAGAGCAGAATACCAATGAGTGGAGCATTGAATGTGAGTGATGTGATATTCCGTGGATTCAGTGGAACATCAGCAAAGAAGAATGCTATTAACCTGAATTGCTCCTCATCAGGTTGTTTCGACATTGTGTTGGATCATATTCACATTGTTTCTTCTCTACCAGGAAAACCAGCTTCTTGTTCTTGCAATAATGCTCATGGAACAGCTACAGACACAGTTCCAAAGTGTTATTTATTGTCATGA 1227 0.3985 MQTLITFLLILGFVSPCLCVRWNNARTQNKTYNVKDYGAYGDGKYDDSGAFLRAWKDICGSQDTPTLVIPPNGVFLIKSITLSGPCIATSINIQLQGSIVAPVKNEWLKVLGMLDPIQDPEQDLTDQRFNLIVISNVSRLSLDGTGGSIDGFGSSWWDCRNCERPTILRFRFCNDLTVSNLNISNSPKAHIRMNSCENATFSNISIHSPGDSPNTDGIDILASKNILIQDSTMHCGDDCIAISGGSSHINATGIACGPGHGISIGSLGRNKAYDTVEEVYVKNCTFTNTENGARIKTVPGGSGYARNIIFENITVIQAQNPIIIDQYYESRIPMSGALNVSDVIFRGFSGTSAKKNAINLNCSSSGCFDIVLDHIHIVSSLPGKPASCSCNNAHGTATDTVPKCYLLS* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0393 408 SUPERFAMILY Pectin lyase-like 22 404 IPR011050 -
Pvu10g0393 408 Gene3D - 20 405 IPR012334 -
Pvu10g0393 408 ProSitePatterns Polygalacturonase active site. 253 266 IPR000743 GO:0004650|GO:0005975
Pvu10g0393 408 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 404 - -
Pvu10g0393 408 PANTHER - 1 404 - -
Pvu10g0393 408 SMART pbh1 196 222 IPR006626 -
Pvu10g0393 408 SMART pbh1 305 326 IPR006626 -
Pvu10g0393 408 SMART pbh1 173 195 IPR006626 -
Pvu10g0393 408 SMART pbh1 223 244 IPR006626 -
Pvu10g0393 408 SMART pbh1 335 362 IPR006626 -
Pvu10g0393 408 SMART pbh1 276 297 IPR006626 -
Pvu10g0393 408 Pfam Glycosyl hydrolases family 28 59 395 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0393 Pvu-Chr10 5499042 5502715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0393 1 404 Glycoside Hydrolase AT5G17200 39.130 2.33e-94 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0393 K01184 - gmx:100820332 477.248