Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0824 ATGCAGAGACTAATAATCACTTGTGTTTTGATTCCTTTCTTTGTTTCACCATGTTTTTGTAAGAGGTTCTTGATGGCATCTTCCAACACATACAATGTGATTGATTATGGTGCCAAAGGAGATGGCGAAACTGATGACTCCCAGGCATTCTTAAGTGCTTGGAAAAAGGCTTGTTCGACAGAAGGTGAATCAAGCCTAGTTATACCATCAAACGGAGTATTTTTACTGAAGAAGAACATAATCTTGAAGGGTCCTTGCCAAGCCAAAAACATTCAAATTCAGCTTCAAGGAAAAATAATTGTAGCAAGCCAGGATGCATGGCTAGGTGATAAATCTTCGATAATTTGGATCTCAAACGTGAATGGTCTCACGATCGATGGAACTGGAGGATTAATCGATGGCCTCGGTTCTTCTTGGTGGACATGCAAAAACTGTCAACGACCATCGGTCCTTGCTTTCAATTCATGCAATGGTCTCATTGTTAGTTCCTTGAGCATCACAAATAGTCCACATGCTCACATTACCATAAATGGTTGTGAGGGTGCCACATTCTCCAATATTAACATTAAATCTCCCGGTGATAGCCCTAACACCGATGGAATCGACATTTCTTCTTCCAAAAGAATCTTGGTAAAAGATTCCAACATAGCTACTGGTGATGACTGTATTGCAATCATAGGTGACTCTTCTGACATTAATGCCACTGGAATTGCCTGTGGACCAGGCCATGGAATAAGCATTGGAAGCTTGGGTAAAAACAATGGCCATGACAAAGTGGAACAAGTTTATGTATATGATTGCAGCTTCACGAATACTCAAAATGGAGCAAGAATCAAGACATTTAAGAATGGACCAGGTTATGCCAGAAACATCACTTATGAGAAAATTACATTAACACAAACATACCACCCAATACTTATAGATCAAAACTACGTCGGTGTAGAGAGTGAAGGAGGAGTTGAAGTGAGTGGGGTGACATTTCGAGGGTTTCAAGGAACATCAGCAGATGACAAAGCTATTACCTTAGCTTGCGGTTCAAAAGGTTGTTTCGACATTGTGTTGGATCAAGTTGACATTAAATCTTCCAAAGCAGGAAAACCAGCAGCTTGTTCTTGCAGTAATGCCCATGGAAGAGCTACATCCACAGTTCCAAATTGTTACTCCTTATCTTAA 1173 0.4032 MQRLIITCVLIPFFVSPCFCKRFLMASSNTYNVIDYGAKGDGETDDSQAFLSAWKKACSTEGESSLVIPSNGVFLLKKNIILKGPCQAKNIQIQLQGKIIVASQDAWLGDKSSIIWISNVNGLTIDGTGGLIDGLGSSWWTCKNCQRPSVLAFNSCNGLIVSSLSITNSPHAHITINGCEGATFSNINIKSPGDSPNTDGIDISSSKRILVKDSNIATGDDCIAIIGDSSDINATGIACGPGHGISIGSLGKNNGHDKVEQVYVYDCSFTNTQNGARIKTFKNGPGYARNITYEKITLTQTYHPILIDQNYVGVESEGGVEVSGVTFRGFQGTSADDKAITLACGSKGCFDIVLDQVDIKSSKAGKPAACSCSNAHGRATSTVPNCYSLS* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0824 390 PANTHER - 4 386 - -
Vra9g0824 390 ProSitePatterns Polygalacturonase active site. 236 249 IPR000743 GO:0004650|GO:0005975
Vra9g0824 390 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 4 386 - -
Vra9g0824 390 Gene3D - 24 388 IPR012334 -
Vra9g0824 390 SMART pbh1 179 205 IPR006626 -
Vra9g0824 390 SMART pbh1 206 227 IPR006626 -
Vra9g0824 390 SMART pbh1 288 309 IPR006626 -
Vra9g0824 390 SMART pbh1 259 280 IPR006626 -
Vra9g0824 390 SUPERFAMILY Pectin lyase-like 21 387 IPR011050 -
Vra9g0824 390 Pfam Glycosyl hydrolases family 28 58 376 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0824 Vra-Chr9 9693387 9697517 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0824 24 379 Glycoside Hydrolase AT5G44840 42.234 1.42e-93 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0824 K01184 - gmx:100820332 477.633