Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4518 ATGCACTATGGTGCTAAGGGCGATGGAAAATCTGACGATTCACATGCATTTTTGAGTGCATGGAAAGTAGCATGTGAGTCTGCAGAGGTAGGAACTCTAGTTATACCAGGAGGAAAAACATTCTTGGTAACGAGCATAACTACACTAACGGGTCCTTGCAAGAGCTCAAGTATTAACATTCAGCTTCAAGGGAACATTGTTGCACCTTCTTTTGATGCATGGGGGGCTGATAAGTCAAAATGGATTTCAATTCACTCTGTAAACCATCTCACAATTAATGGCGGAGGAAAAATTGATGGTCTAGGTTCTTCTTGGTGGGAAAGATGCAAAACTTGTTCACGGCCTACGTCATTGAGTTTTTATTCTTGCAATGGTCTTACTGTGAGTAACCTGCACCTGGCTAATAGTCCTGGAAGTCACATAAACGTAGATGGTTGCAATGGTGCGAGATTCTCTCATATTAACATTCAAGCTCCTGCTAATAGCCCTAACACCGATGGATTTGATATTTCTGATTCCAGACATATCATGATACAAGATTCCAACATAGCAACTGGTGATGATTGTATTGCCATTAATGGTCGCAGTACCTCTTTCATCAATGCTACTCGGGTTGCTTGTGGACCAGGCCATGGGATAAGCGTTGGAAGCCTTGGAAAAAGTGGTGCCCATGAGACTGTTGAAGAGGTTTATGTATATGACTGTAGTTTCACGGGGACTCAAAATGCAGCAAGAATCAAGACAGTTTCGGGTGGTTCAGGTTATGCAAGAAAAATAACTTTCGAAAAAATAACACTTACAAAGGCTGGCGACCCAATAATAATTGACCAATATTATGCTCAAGAGGATGATTCATCAGTACAAGTGAGTGATGTGACATTTCGTGGAATTCGTGGAACTTCTTCGGATGACATAGCTATAAACTTACATTGCTCCCCACCGGGTTGTTTCAATCTTGTGTTGGATCAAATTAATATTGTGTCTTCTGTACCAGGAAAGAAAACTTCTGCTTCTTGCCAAAATGCCCATGGAAGAGTTACATCTTCTGTTCCAAGTGTCCCTTGTTTGTTGAGGTGA 1077 0.4141 MHYGAKGDGKSDDSHAFLSAWKVACESAEVGTLVIPGGKTFLVTSITTLTGPCKSSSINIQLQGNIVAPSFDAWGADKSKWISIHSVNHLTINGGGKIDGLGSSWWERCKTCSRPTSLSFYSCNGLTVSNLHLANSPGSHINVDGCNGARFSHINIQAPANSPNTDGFDISDSRHIMIQDSNIATGDDCIAINGRSTSFINATRVACGPGHGISVGSLGKSGAHETVEEVYVYDCSFTGTQNAARIKTVSGGSGYARKITFEKITLTKAGDPIIIDQYYAQEDDSSVQVSDVTFRGIRGTSSDDIAINLHCSPPGCFNLVLDQINIVSSVPGKKTSASCQNAHGRVTSSVPSVPCLLR* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4518 358 SMART pbh1 289 311 IPR006626 -
Lja3g4518 358 SMART pbh1 256 277 IPR006626 -
Lja3g4518 358 SMART pbh1 146 172 IPR006626 -
Lja3g4518 358 SMART pbh1 173 194 IPR006626 -
Lja3g4518 358 SMART pbh1 227 248 IPR006626 -
Lja3g4518 358 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 356 - -
Lja3g4518 358 Gene3D - 1 353 IPR012334 -
Lja3g4518 358 SUPERFAMILY Pectin lyase-like 2 357 IPR011050 -
Lja3g4518 358 Pfam Glycosyl hydrolases family 28 25 343 IPR000743 GO:0004650|GO:0005975
Lja3g4518 358 ProSitePatterns Polygalacturonase active site. 204 217 IPR000743 GO:0004650|GO:0005975
Lja3g4518 358 PANTHER - 1 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4518 Lja-Chr3 86981107 86984465 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4518 3 356 Glycoside Hydrolase AT5G17200 45.550 4.60e-105 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4518 K01184 - gmx:100801217 423.705