Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01093 ATGTTGATTCTGGGTTTTGTTTCAGGCACTTTGTGTCTGAGCAGCAATGCTCAAATGAAGTATTTGAATGTGATGGATTATGGAGCTCATGGCGATGGAACAACTGATGATTCACATGCAATTTTAAATGCATGGAATGGTGTGTGTGGAGGGGGAGGACCAGCAACTCTATTGATACCTTCAACCAAAACCTTTTTGGTGAAAAGATTAAAGCTAAATGGTCCTTGCAAGGCCCCAAATGTAGCCATTAAGTTTGAAGGGAAGATAGTTGCTCCATCTATGAAAAAATGGGGTGGTAATCCGTTCAATTGGATTGAGATATTTTCTGTAAATGGTCTAACAATTGAAGCTGATGGAGGAATCATTGATGGCAATGGCGATACTTGGTGGCAGACATGCAGAACATGCAGGCGCCCAGCATCCCTACGTTTCCATGCTTGTAATGGTCTTACTGTGAAATCTCTGAGAATGAGTAACAGCCCTGGTGCTCACATATCAGTGAATAGCTGCAATGGCGCATTCTTCTCTCAAATGAATATCGCTGCTCCTCGGGATAGTCCTAACACTGATGGCTTTGACATTAGTAATTCCAAAAATATAGCAATCGAAGATTCTACCATAGCAACAGGTGATGATTGCATTGCCATCAATGGTGGCTGTTCTTTCATCAACGCCACTAGAATTTTCTGCGGACCAGGCCATGGCATAAGCGTTGGAAGCCTTGGTAAAAATAATTCGTACGAGACAGTAGAAGAGGTTCACGTACGGAATTGCAGCTTCAATGGCACCACAAATGGAGCAAGAATCAAGACATGGCCGGGTGGATCAGGCTATGCAAGAAAGATCACGTTTGAGGAAATCATACTTCAAGATGTTAAGAATTCAATCATTATAGACCAGTACTACGGCAATAAAAATCAAAGTGAAGGGGAAAGTGCGGTGAAGGTGAGTGAAGTGAGTTATCGAGGCTTCAATGGAACTTCTGCAAGTGATAAGGCAATCAACGTGAACTGTAGCCCATCTGGTTGTTCCGACATTTCAATGGATCAAATATACATTGTCTCTTCACAACCATCCAGAAAAGCCTATGCTTTTTGCCAGAATGCTAAAGGGACCATTGAAAACACTGTTCCAAAAGTATCTTGTGTATGA 1152 0.421 MLILGFVSGTLCLSSNAQMKYLNVMDYGAHGDGTTDDSHAILNAWNGVCGGGGPATLLIPSTKTFLVKRLKLNGPCKAPNVAIKFEGKIVAPSMKKWGGNPFNWIEIFSVNGLTIEADGGIIDGNGDTWWQTCRTCRRPASLRFHACNGLTVKSLRMSNSPGAHISVNSCNGAFFSQMNIAAPRDSPNTDGFDISNSKNIAIEDSTIATGDDCIAINGGCSFINATRIFCGPGHGISVGSLGKNNSYETVEEVHVRNCSFNGTTNGARIKTWPGGSGYARKITFEEIILQDVKNSIIIDQYYGNKNQSEGESAVKVSEVSYRGFNGTSASDKAINVNCSPSGCSDISMDQIYIVSSQPSRKAYAFCQNAKGTIENTVPKVSCV 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01093 383 ProSitePatterns Polygalacturonase active site. 227 240 IPR000743 GO:0004650|GO:0005975
Spst4g01093 383 Gene3D - 3 381 IPR012334 -
Spst4g01093 383 Pfam Glycosyl hydrolases family 28 49 370 IPR000743 GO:0004650|GO:0005975
Spst4g01093 383 SUPERFAMILY Pectin lyase-like 11 382 IPR011050 -
Spst4g01093 383 PANTHER - 21 371 - -
Spst4g01093 383 SMART pbh1 197 218 IPR006626 -
Spst4g01093 383 SMART pbh1 147 196 IPR006626 -
Spst4g01093 383 SMART pbh1 250 271 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01093 Spst-Chr4 43777822 43780040 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01093 21 383 Glycoside Hydrolase AT5G17200 45.220 4.04e-107 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01093 K01184 - mtr:25498049 432.18