Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01558 TGTTTTGGAGGCAGTGACGCATCTTGTAATGTGATGGATTTTGGTGCTGCATTTTTAAAAGCATGGGAAAGTAGTTGTGGAGCAGAAGAGACACCAACATTACTAATTCCACCAAACTATGTATTCTTGTTGTCTGCACTAATTCTAAAGGGTCCATGCAAGGCCACAACTATTCTAATTAAGCTTGAAGGGAAAATAGTTTCACCTAAGAAGTATTCATGGGTAGGTAATAATAAGAACAGTTTGATCACCATAATAAAGGTAGATAGACTGACAGTAGACGGAACTGAAGGACTGATCGATGAATTTGGTTCTTCTTGGTGGTCATGCAAAAGTTGTCCACGACCATCAATTCTTACTTTCCAATATTGCAATAATCTTACTGTTCATGACTTCACCAACAGTCCAAAATCTCACATACACCTACATGGCTGTGAGGATGCTACGTTTTCTCGTATCAATGTCACTGCTCCTGCTGACAGCCCTAACAATGATGGAATTGACGTCTCTTTTTCCAAAAACATCTTGATTCAGGATTCCTCTATGCAAACCGGTGATGATTGTATAGCTATTAGTGGTGGCTCCTCTTCAGTCAATGTTACTGGGATTGCTTGTGGACCAGGCCATGGAATAAGCATTGGCAGCCTAGGAAAGAGGAATGACACAGTGGAAGGAATACATGTACGAAATTGCAGCTTGACAAAAACTAAATATGGAGCAAGAATCAAAACATTTCCTAATGAAGAAGTAGAAGTGAGTGGGGTGACATTCAGAGGGTTTCAAGGAACATCCTTTGATGGCAAAGCTATAACCTTAGACTGTGGAGAATCAGGTTGCTACAACATCGTATTGGATCAAATCGACATTGTTTCTTCTTTACCAGCAAAGCCAGCCTGTTGTTCTTGCAATAATGCCCATGGAACAGTTACATCTACTGTTCCAAATTGTTCTTCTTTATTGTCATGA 966 0.3996 CFGGSDASCNVMDFGAAFLKAWESSCGAEETPTLLIPPNYVFLLSALILKGPCKATTILIKLEGKIVSPKKYSWVGNNKNSLITIIKVDRLTVDGTEGLIDEFGSSWWSCKSCPRPSILTFQYCNNLTVHDFTNSPKSHIHLHGCEDATFSRINVTAPADSPNNDGIDVSFSKNILIQDSSMQTGDDCIAISGGSSSVNVTGIACGPGHGISIGSLGKRNDTVEGIHVRNCSLTKTKYGARIKTFPNEEVEVSGVTFRGFQGTSFDGKAITLDCGESGCYNIVLDQIDIVSSLPAKPACCSCNNAHGTVTSTVPNCSSLLS 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01558 321 Gene3D - 4 319 IPR012334 -
Vimu9g01558 321 SMART pbh1 223 244 IPR006626 -
Vimu9g01558 321 SMART pbh1 247 286 IPR006626 -
Vimu9g01558 321 SMART pbh1 172 193 IPR006626 -
Vimu9g01558 321 SMART pbh1 145 171 IPR006626 -
Vimu9g01558 321 Pfam Glycosyl hydrolases family 28 26 258 IPR000743 GO:0004650|GO:0005975
Vimu9g01558 321 ProSitePatterns Polygalacturonase active site. 202 215 IPR000743 GO:0004650|GO:0005975
Vimu9g01558 321 SUPERFAMILY Pectin lyase-like 7 318 IPR011050 -
Vimu9g01558 321 PANTHER - 248 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01558 Vimu-Chr9 24817922 24819934 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01558 5 306 Glycoside Hydrolase AT4G32380 41.290 2.05e-70 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01558 K01184 - gmx:100820332 414.075