Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01561 ATGCAAAGCCTAATCACTTGCACTTTGATTATTGCTTTAATTTCAACATGTTTTGGAAGCTATGACACATCTTGTAATGTGATAGATTTTGGTGCTGTGGGAGATGGCAAAACAGATGATTCCGCAGCATTTTTGAAAGCATGGGAAAGTAGTTGTGGAGCAGAAGGGACACCAACGTTGCTAATTCCACCGAACTATGTATTCTTGTTTTCTGCCCTAATTCTAAAGGGTCCATGCAAGGCCACAACTATTCTAATTAAGCTTGAAGGGAAAATAGTTGCACCTACGAAGTATTCATGGGTAGATAATAATAATGAGAACAGTTTGATCGTCATCACAAAGGTAGATAGACTGACAGTAGACGGAACTGAAGGACTGATTGATGGGTTTGGTTCTTCTTGGTGGCCATGCAAAAGTTGTCCACGACCATCAATTCTTATTTTCCAATATTGCAATAATCTTACTGTTCATGACTTCACCGTCTCCAACAGTCCAAAATCTCACATACACGTACATGGCTGTGAGAATGCTACGTTTTCTCGTATCAATGTCACTGCTCCTGCTGACAGCCCTAACACCGATGGAATTGACGTTACTTTTTCTAAAAACATCTTGATTCAGGATTCCTATATGCAAACCGGTGATGATTGTATTGCTATTAGTGGTGGCTCCTCTTCAGTCAATGTTACTGGGATTGCTTGTGGACCAGGCCATGGAATAAGCATTGGCAGCCTAGGAAAGAGGAATGACACAGTGGAAGGAATACATGTACGAAATTGCAGCTTGACAAAAACTAAATATGGAGCAAGAATCAAAACATTTCCAGTTGGAATTGGTTGTGCAAAGCAAATCACTTTTGAGGATATAACCTTAGTAGAAACCCGTTACCCAATATTTATTGATAAAAACTATGACAGTTATCCTTCAACGAATGAAGAAGTAGAAGTGAGTGGGGTGACATTCAGAGGGTTTCAAGGAACATCCTTTGATGGCAAAGCTATAACCTTAGACTGTGGAGAATCAGGTTGCTACGACATCGTATTAGATCAAATCAACATTGTTTCTTCTTTACCAGCAAAGCCAGCATGTTGTTCTTGCAATAATGCTCATGGAACAGTTACATCTACTGTTCCAAATTGTTCTTGTTTATTGTCATGA 1158 0.3946 MQSLITCTLIIALISTCFGSYDTSCNVIDFGAVGDGKTDDSAAFLKAWESSCGAEGTPTLLIPPNYVFLFSALILKGPCKATTILIKLEGKIVAPTKYSWVDNNNENSLIVITKVDRLTVDGTEGLIDGFGSSWWPCKSCPRPSILIFQYCNNLTVHDFTVSNSPKSHIHVHGCENATFSRINVTAPADSPNTDGIDVTFSKNILIQDSYMQTGDDCIAISGGSSSVNVTGIACGPGHGISIGSLGKRNDTVEGIHVRNCSLTKTKYGARIKTFPVGIGCAKQITFEDITLVETRYPIFIDKNYDSYPSTNEEVEVSGVTFRGFQGTSFDGKAITLDCGESGCYDIVLDQINIVSSLPAKPACCSCNNAHGTVTSTVPNCSCLLS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01561 385 SUPERFAMILY Pectin lyase-like 8 383 IPR011050 -
Vimu9g01561 385 Gene3D - 15 382 IPR012334 -
Vimu9g01561 385 PANTHER - 24 372 - -
Vimu9g01561 385 Pfam Glycosyl hydrolases family 28 52 370 IPR000743 GO:0004650|GO:0005975
Vimu9g01561 385 SMART pbh1 174 200 IPR006626 -
Vimu9g01561 385 SMART pbh1 201 222 IPR006626 -
Vimu9g01561 385 SMART pbh1 311 336 IPR006626 -
Vimu9g01561 385 SMART pbh1 281 302 IPR006626 -
Vimu9g01561 385 SMART pbh1 252 273 IPR006626 -
Vimu9g01561 385 SMART pbh1 151 173 IPR006626 -
Vimu9g01561 385 ProSitePatterns Polygalacturonase active site. 231 244 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01561 Vimu-Chr9 24830005 24832129 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01561 2 371 Glycoside Hydrolase AT5G27530 43.008 8.56e-93 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01561 K01184 - gmx:100820332 532.717