Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00900 ATGCAAAGATTAATCATTTGGGTTTTGATTCTTTGCTTTGTTGCACCATGTTTGTGTGTGAGGTTCATAGGTGGAACTAGTAACACATTCAATGTGATTGACTATGGTGCTATAGGAGATGGTAAAACTGATAATTCGCAGGCATTTTTAACTGCATGGCAAAAGACTTGTCAAGCACAAGGTACACCAACCCTAGTTATACCATCAAAAGGAGAATTCTCAGTGAACAAGAACATCATCTTTAAAGGTCCTTGCATGGCCACAAACATTAAAATTCAGCTTCAAGGAAAAATAGTTGTAGCAACTAAGGATGCATGGCTCGGTGATAAATCTACGGTAATTTTGATCACAAACGTGAATGGTCTCACCATTGATGGAACTGGTGGATTAATCGATGGCGCTGGTTCTTCTTGGTGGGCATGCAAAACCTGCCCACGACCATCGGTCCTTAGTTTCAATGCATGCAATAATCTTATTGTTAGTTACTTGAGCATCACAAACAGTCCAAAAGCTCACATAACCATAAATGGTTGTGTGGATGCCACATTGTCTGATATTACTATTCAGGCTTCTGGCAATAGCCCTAACACTGATGGAATTGACATTTCTGCTTCCAAAAATGTCTTGATAAGAGATTCCAATATAGCTTCTGGTGATGATTGTATTGCAATCATAGGCGATTCTTCTTACATTAATGCCACTGGAATTGCTTGTGGACCAGGCCATGGAATAAGCATTGGTAGCTTGGGTAGAAACAATGGCCATGACCATGTGGAACAAGTTTATGTATATAACTGCAGCTTCACCAAAACTACAAATGGAGCCAGAATCAAGACATTTCAGAGTGGAGGAGGGGTCCAAGTGAGTGGTGTGACGTTTCGAGGGTTTCAAGGAACATCTGCAGATGACAAAGCTATTACCATAGCTTGCGAGAAACAAGGTTGTTTGAACATTGTGTTGGATCAAATCAGCATTACATCTGTTATACCAGGAAAACCAGCTTCTTGTTCTTGCAGTAATGCCCATGGAATAGCTACATCCACAGTTCCAGAATGTCCTTCCTTAACGAAATAA 1074 0.4041 MQRLIIWVLILCFVAPCLCVRFIGGTSNTFNVIDYGAIGDGKTDNSQAFLTAWQKTCQAQGTPTLVIPSKGEFSVNKNIIFKGPCMATNIKIQLQGKIVVATKDAWLGDKSTVILITNVNGLTIDGTGGLIDGAGSSWWACKTCPRPSVLSFNACNNLIVSYLSITNSPKAHITINGCVDATLSDITIQASGNSPNTDGIDISASKNVLIRDSNIASGDDCIAIIGDSSYINATGIACGPGHGISIGSLGRNNGHDHVEQVYVYNCSFTKTTNGARIKTFQSGGGVQVSGVTFRGFQGTSADDKAITIACEKQGCLNIVLDQISITSVIPGKPASCSCSNAHGIATSTVPECPSLTK* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00900 357 Pfam Glycosyl hydrolases family 28 284 342 IPR000743 GO:0004650|GO:0005975
Lapu10g00900 357 Pfam Glycosyl hydrolases family 28 57 283 IPR000743 GO:0004650|GO:0005975
Lapu10g00900 357 Gene3D - 24 355 IPR012334 -
Lapu10g00900 357 ProSitePatterns Polygalacturonase active site. 235 248 IPR000743 GO:0004650|GO:0005975
Lapu10g00900 357 SUPERFAMILY Pectin lyase-like 18 353 IPR011050 -
Lapu10g00900 357 PANTHER - 285 343 - -
Lapu10g00900 357 SMART pbh1 205 226 IPR006626 -
Lapu10g00900 357 SMART pbh1 283 310 IPR006626 -
Lapu10g00900 357 SMART pbh1 178 204 IPR006626 -
Lapu10g00900 357 SMART pbh1 258 279 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00900 Lapu-Chr10 10803113 10805771 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00900 9 352 Glycoside Hydrolase AT5G17200 36.386 4.54e-74 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00900 K01184 - gmx:100820332 439.499