Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00179 ATGCAAGGGTTCCTCACTTTTCTTTTGATTCTTGGTTTTATTTCACCTAATCTATGTATGAGGTTGAACGTTGGAGCAAAAAATGCTATCTATAATGTAATGCAATATGGTGCACGTGGCGATGGTAGATCTGATGATTCACGAgCATTCTCAAATGCATTTAGTGGTGCGTGTAAAGCAACAGGGATATCAACACTATTTATTCCAGCAGGAAAAATGTTCTTGGTGTCAAAGTTGAATTTTAGTGGTCCTTGTAACGCCAAAATTTTGATTCAgCTTGAAGGACAAATAGTTGCACCTTATAAGGCAGCATGGACAGCTGGGTCATATTGGATTAGTATCGAATATATAAACGGACTCACAATTGATGGCAATGGAGCAATCAATGGAAATGGTTTTACTTGGTGGCAATGCCCAACTTGTTTTCGACCTAAGATGTTGTATTTTCATTCATGCAAGGGTCTCACGGTTAGAAACGTAAGGATTATTAATAGTCCAAAATCTCATATATCTGTTAATGCGTGCAATGGTGCAACATTTTCTCATATACACATTGCTTCTCCTGCTACTAGCCCCAACACAGATGGATTTGACATTTCTTATTCAAGTAATATCTTGATAGAAGATTCCGAGATCAAATCAGGCGACGATTGTGTTGCCGTCAATGGTGGCTCATCTTTTGTTAATACTACTCGAGTTACCTGTGGACCAGGTCATGggataagTGTTGGTAGCCTTGGTGAAAATAGAGGTGATGATAAAGTTTCCAATATTTATGTACGGAATTGCACCTTCATAGGAACTACAAACGGAGCAAGGATCAAGACAATTTCGGATGCAGTGTCGGTGAGTGATGTGACATATCGAGAATTTACCGGAACTTCTCCTAGTGACGTACCTATTTCTTTAAGATGTAGCTCCGATGGTTGTTTTGGCCTTCTATTTGATCAAAATAACATTGTCTCTACTCAACAAGGAAAGAAGACTTCATCTTTTTGTAGCAATGCTCATGGAATAGCTAGAAATACTATTCCACTTGTTTCTTGCCTATCTAAGTGA 1059 0.3815 MQGFLTFLLILGFISPNLCMRLNVGAKNAIYNVMQYGARGDGRSDDSRAFSNAFSGACKATGISTLFIPAGKMFLVSKLNFSGPCNAKILIQLEGQIVAPYKAAWTAGSYWISIEYINGLTIDGNGAINGNGFTWWQCPTCFRPKMLYFHSCKGLTVRNVRIINSPKSHISVNACNGATFSHIHIASPATSPNTDGFDISYSSNILIEDSEIKSGDDCVAVNGGSSFVNTTRVTCGPGHGISVGSLGENRGDDKVSNIYVRNCTFIGTTNGARIKTISDAVSVSDVTYREFTGTSPSDVPISLRCSSDGCFGLLFDQNNIVSTQQGKKTSSFCSNAHGIARNTIPLVSCLSK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00179 352 SUPERFAMILY Pectin lyase-like 21 350 IPR011050 -
Tsu08g00179 352 Gene3D - 18 348 IPR012334 -
Tsu08g00179 352 SMART pbh1 152 174 IPR006626 -
Tsu08g00179 352 SMART pbh1 175 201 IPR006626 -
Tsu08g00179 352 SMART pbh1 202 223 IPR006626 -
Tsu08g00179 352 SMART pbh1 255 276 IPR006626 -
Tsu08g00179 352 Pfam Glycosyl hydrolases family 28 58 281 IPR000743 GO:0004650|GO:0005975
Tsu08g00179 352 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 278 - -
Tsu08g00179 352 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 279 350 - -
Tsu08g00179 352 PANTHER - 279 350 - -
Tsu08g00179 352 ProSitePatterns Polygalacturonase active site. 232 245 IPR000743 GO:0004650|GO:0005975
Tsu08g00179 352 PANTHER - 1 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00179 Tsu-Chr8 1652754 1656194 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00179 30 351 Glycoside Hydrolase AT5G27530 39.946 1.98e-78 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00179 K01184 - gmx:100820332 378.637