Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01411 ATGCAAAGGCTAATAATCTGTTGTATCTTGATTCATTTTTTTGTTTCACCCACTTTGTCCATCAGAATCAATGCTGCAACCCAAGGGACATTAGTTAATGTGATAGACCAAGGAGCTCGTGGTGATGGCAAAACTGATGATTCAAATGCAATTTTAAGTGCATGGCAGCGTGTGTGTGGAATGGCTGGGCCAGCAACTCTAGTCATACCTGCAGGAAAAGTGTTTTTTGTGAAAAGATTAGAGCTTGATGGTCCTTGCAAGGCCCAAAGTGTTCGAATTCAGTTTGCAGGGAAAATAGTTGCTCCATCTTTGGATGCATGGGTTGGTGATAAGGGAAAATGGATTGTGATCTCAAATGTAAATGGATTAACAATTGATGCGGAAGGAGGAAATATCGATGGCAATGGTTCTTCTTGGTGGGAGAAATGCAAAAGTTGTCAACGACCAACATCCTTGCGTTTCCACAATTGTAATGGTCTTGTTGTGAATTCTTTGAGCATGACAAATAGTGCTGGAGCTCACATATCTGTAAATGGTTGCAACGGTGCAATATTCTCTCATATGAATGTTATTGCTCCTGAGCACAGCCCTAACACTGATGGCTTTGATATTGCTAATTCCAAATTTGTAACCATACAAGATTCTACTATAGCAACTGGTGATGATTGTATTGCCATCAATGGTGGCTGCTCCAACATCAATGCCACTAGGCTTTTCTGTGGACCAGGCCATGGGATAAGCATTGGCAGTCTGGGTAGAGGTGGAGCTCGTGAGACAGTTGAAGAGGTTTATGTACATAATTGCAGCTTCATCGGGACTACAAATGGAGCAAGAATTAAAACATGGCCGGGTGGATCAGGTTATGCAAGAAAAATCACTTTCGACCAAATCATACTAAAAAATGCTCAAAATCCAATCATTATAGACCAGAACTATGGGGTTAAACAACTAAGTTCATCGGAGCAAGCAGTGATGGTGAGCGAAGTGACTTATCGTGGATTTGTTGGAACTTCGGCTAAGGACTTGGCAATACTCTTGAAATGTAGCACATTGGGTTGTTTCAATATTGTATTTGATAATGTTGACATTGTATCTTCGCAACCAGGAAAATCAGCCTATGCTTCTTACTACAATGCACATGGATCAGTTACTAACACTGTTCCAAAAATCTCCCTGTTCAAATGA 1185 0.4084 MQRLIICCILIHFFVSPTLSIRINAATQGTLVNVIDQGARGDGKTDDSNAILSAWQRVCGMAGPATLVIPAGKVFFVKRLELDGPCKAQSVRIQFAGKIVAPSLDAWVGDKGKWIVISNVNGLTIDAEGGNIDGNGSSWWEKCKSCQRPTSLRFHNCNGLVVNSLSMTNSAGAHISVNGCNGAIFSHMNVIAPEHSPNTDGFDIANSKFVTIQDSTIATGDDCIAINGGCSNINATRLFCGPGHGISIGSLGRGGARETVEEVYVHNCSFIGTTNGARIKTWPGGSGYARKITFDQIILKNAQNPIIIDQNYGVKQLSSSEQAVMVSEVTYRGFVGTSAKDLAILLKCSTLGCFNIVFDNVDIVSSQPGKSAYASYYNAHGSVTNTVPKISLFK 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01411 394 ProSitePatterns Polygalacturonase active site. 237 250 IPR000743 GO:0004650|GO:0005975
Cca01g01411 394 SUPERFAMILY Pectin lyase-like 23 390 IPR011050 -
Cca01g01411 394 PANTHER - 5 390 - -
Cca01g01411 394 Pfam Glycosyl hydrolases family 28 59 369 IPR000743 GO:0004650|GO:0005975
Cca01g01411 394 Gene3D - 16 391 IPR012334 -
Cca01g01411 394 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 5 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01411 Cca-Chr1 28767107 28771177 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01411 19 382 Glycoside Hydrolase AT5G27530 47.594 1.65e-104 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01411 K01184 - gmx:100820332 428.328