Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10313 ATGGCGCAAGTGAGGAACAAGCAAGTGATTCTGAGGGATCATGTGTCTGGTTTTCCTAAAGAATCCGACATGAACATTGTTGAGAGTTCCATAACTCTCAAGCTTCCAGAAGGTTCCAATGAGGTGCTGCTAAAAAATCTTTACTTGTCCTGTGATCCATACATGCGGAATCTTATGAACAAGCCAGAAGGCCCTCCTAATCCTCGTACCTACATCCCTGGCTCTCCATTAGTAGGGTATGGTGTGTCTAAAGTCCTGGAATCTGGACACCCAGATTATAAGGAAGGTGATTTAGTGTGGGGATTTACTAAATGGGAAGAGTACAGCTTGGTCCCCTCAGCTCAAATACTTTTTAAGATTGAACACACTGATGTCCCTCTATCCTACTATACTGGAATTCTTGGTATGCCAGGAGTGACTGCTTATGCGGGTCTCTTTGAAGTTGGCTCTCTCAAGAAAGGAGAGTATGTTTTTGTTTCTGCTGCCTCTGGCGCAGTTGGTCAACTTGTTGGCCAATTTGCTAAACTGAATGGTTGTTATGTTGTTGGAAGTGCTGGAACTAAAGAGAAGGTGGATCTATTGAAGAATAAATTCGGATTTGATGGAGGTTTTAACTACAAGGAAGAGCCTGACCTCAATGCAGCTTTGAAAAGGCACTTTCCAGAAGGCATTGACGTTTACTTTGAGAATGTTGGGGGCAAGACACTTGATGCTGTACTCCTGAATATGAGAGTGCATGGTCGCATACCTGTCTGTGGAATGATCTCACAGTATAATCTTACTCAACATGAAGGTGTAACAAATTTGGCACAGATCATATTTAAGAGGGTTCGTATGGAAGGGTTTAATTTCATGGATTTCTGTCACCTATATCCCAAATTCATGGAGTTTGTCCTGCCTCATATTAGAGAAGGGAAAATTGTGTATGTGGAAGACATAGCTGAGGGTCTTGAGAATGGCCCTGCAGCATTGGTTGGCCTTTTTAGTGGTCGCAATGTTGGGAAACAAGTACAAAGAAAGATGGCGCAAGTGAGGAACAAGCAAGTGATTCTGAGGGATCATGTGTCTGGTTTTCCTAAAGAATCCGACATGAACATTGTTGAGAGTACCTTAACTCTCAAGCTTCCAGAAGGTTCCAATGATGTGCTGCTCAAGAATCTTTACTTGTCTTGTGATCCATACATGCGGAATCTTATGAACAAGCCAGAAGGCCCTCCTAATCCTTTTGCCTACACCCCTGGCTCTCCATTAGCAGGGTATGGTGTGTCTAAAGTCCTGGAGTCTGGACACCCAGATTATAAGGAAGGTGATTTAGTGTGGGGATTTACTAAATGGGAAGAGTACAGCTTGGTCCCCTCAGCTCAAATACTTTTTAAGATTGAACACACTGATGTCCCTCTATCCTACTATACTGGAATTCTTGGTATGCCAGGAGTGACTGCTTATGCTGGTCTCTTTGAAATTGGCTCTCTCAAGAAAGGAGAGTATGTTTTTGTTTCAGCTGCCTCTGGCGCAGTTGGTCAACTTGTTGGGCAATTAGCTAAACTGAATGGTTGTTATGTTGTTGGAAGTGCTGGAACTAAAGAGAAGGTGGATCTATTAAAGAATAAATTTGGATTTGATGGAGGTTTTAACTACAAGGAAGAGCCCGACCTCAATGTTGCTTTGAAAAGGAACTTTCCAGAAGGCATTGACGTTTACTTTGAGAATGTTGGGGGCAAGACACTTGATGCTGTACTCCTGAATATGAGAGTGCATGGTCGCATACCTGCCTGTGGAATGATCTCACAGTATAATCTTACTCAACATGAAGGTGTGACAAATTTGGCACAAATCATATTTAAGAGGGTTCGTATGGAAGGGTTTAATGCCATGGATTTTTGTCACTTATATCCCAAATTCATTGAGTTTGTCCTGCCTCATATTAGAGAGGAGAAAATTGTGTATGTTGAAGATATGGCTGAGGGTCTTGAGAATGGCCCTGCAGCTTTAGTTGGCCTTTTTAGTGGCCGCAATGTTGGGAAACAAGTACTTGTTGTTGCTAGTGAGTAA 2052 0.4254 MAQVRNKQVILRDHVSGFPKESDMNIVESSITLKLPEGSNEVLLKNLYLSCDPYMRNLMNKPEGPPNPRTYIPGSPLVGYGVSKVLESGHPDYKEGDLVWGFTKWEEYSLVPSAQILFKIEHTDVPLSYYTGILGMPGVTAYAGLFEVGSLKKGEYVFVSAASGAVGQLVGQFAKLNGCYVVGSAGTKEKVDLLKNKFGFDGGFNYKEEPDLNAALKRHFPEGIDVYFENVGGKTLDAVLLNMRVHGRIPVCGMISQYNLTQHEGVTNLAQIIFKRVRMEGFNFMDFCHLYPKFMEFVLPHIREGKIVYVEDIAEGLENGPAALVGLFSGRNVGKQVQRKMAQVRNKQVILRDHVSGFPKESDMNIVESTLTLKLPEGSNDVLLKNLYLSCDPYMRNLMNKPEGPPNPFAYTPGSPLAGYGVSKVLESGHPDYKEGDLVWGFTKWEEYSLVPSAQILFKIEHTDVPLSYYTGILGMPGVTAYAGLFEIGSLKKGEYVFVSAASGAVGQLVGQLAKLNGCYVVGSAGTKEKVDLLKNKFGFDGGFNYKEEPDLNVALKRNFPEGIDVYFENVGGKTLDAVLLNMRVHGRIPACGMISQYNLTQHEGVTNLAQIIFKRVRMEGFNAMDFCHLYPKFIEFVLPHIREEKIVYVEDMAEGLENGPAALVGLFSGRNVGKQVLVVASE. 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10313 683 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 132 302 IPR036291 -
Seca4g10313 683 FunFam Prostaglandin reductase 2 133 309 - -
Seca4g10313 683 Pfam Zinc-binding dehydrogenase 505 637 IPR013149 -
Seca4g10313 683 Pfam Zinc-binding dehydrogenase 165 297 IPR013149 -
Seca4g10313 683 Pfam N-terminal domain of oxidoreductase 347 455 IPR041694 -
Seca4g10313 683 Pfam N-terminal domain of oxidoreductase 7 115 IPR041694 -
Seca4g10313 683 CDD double_bond_reductase_like 344 680 - -
Seca4g10313 683 FunFam Prostaglandin reductase 2 473 649 - -
Seca4g10313 683 Gene3D - 348 678 - -
Seca4g10313 683 Gene3D - 8 337 - -
Seca4g10313 683 SUPERFAMILY GroES-like 3 170 IPR011032 -
Seca4g10313 683 Gene3D - 473 649 - -
Seca4g10313 683 Gene3D - 133 309 - -
Seca4g10313 683 SUPERFAMILY GroES-like 343 511 IPR011032 -
Seca4g10313 683 PANTHER PROSTAGLANDIN REDUCTASE 4 338 IPR045010 GO:0016628
Seca4g10313 683 CDD double_bond_reductase_like 4 337 - -
Seca4g10313 683 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 472 643 IPR036291 -
Seca4g10313 683 SMART PKS_ER_names_mod 30 338 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10313 Seca-Chr4 238582034 238595610 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10313 K19825 - gmx:100809668 641.728