Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01409 ATGCAAAGGCTATTGATCTGTTGTATTTTGATTCATTTTTTTGTTTCACCCACTTTGTGTATCCGAAGCAATGCTCTATCCCAAATGACATATGTTAATGTGATGGACCAAGGTGCTCATGGTGACGGAAAAATTGATGATTCAAATGCCATTTTAAGTGCATGGCAGCGTGTGTGTGGAATGGCAGGTCCATCAACTCTTGTCATACCTTCAGGAAAAATATTCTTTGTGAAAAGATTAGAGCTCAATGGTCCTTGCAAGGCACAAAGTGTTGGCATTCAGTTTGCAGGGAAAATAGTTCCGCCTACTATGGATACATGGGTTGGTGATAGGGGAAGTTGGATTGTGATCTCAGATGTAAACAATCTAACAATTGATGCAAAAGGAGGAATTATCGATGGCAATGGTTCTTCTTGGTGGGAGAAATGCAGAAGTTGTAGACGACCAACCTCCCTGCGTTTCCACAATTGTAATGGTCTTGTTGTGAATTCTCTGAGCATGACTAATAGTCCTGGAGCTCACATATCTGTAAATGGTTGCAACGGTGCAAAATTCTCTGGAGTGAGTATTACTGCTCCTGAGCACAGTCCAAACACCGATGGTTTTGATATTGCTGTGTCCAAATATATAACCATAAAAGATTCTACTATAGCAACTGGTGATGATTGTATTGCCATCAATGGTGGCTGCTCCAACATCAATGCTACTAGGCTTTTCTGTGGACCAGGCCATGGGATAAGCATTGGCAGTCTTGGTAAAAATGGATCTCATGAGATAGTTGAAGAAATTTATGTAAATAACTGCAGCTTCATTGGGACGACAAACGGAGCAAGAATTAAAACATGGCCAGGAGGATCTGGTTATGCAAGAAAAATCACATTCGACCAAATCATACTAAAAGATGCTCAAAATCCAATAATTATAGACCAAAACTATGGTATTAAGATACCAAATGCA 957 0.3992 MQRLLICCILIHFFVSPTLCIRSNALSQMTYVNVMDQGAHGDGKIDDSNAILSAWQRVCGMAGPSTLVIPSGKIFFVKRLELNGPCKAQSVGIQFAGKIVPPTMDTWVGDRGSWIVISDVNNLTIDAKGGIIDGNGSSWWEKCRSCRRPTSLRFHNCNGLVVNSLSMTNSPGAHISVNGCNGAKFSGVSITAPEHSPNTDGFDIAVSKYITIKDSTIATGDDCIAINGGCSNINATRLFCGPGHGISIGSLGKNGSHEIVEEIYVNNCSFIGTTNGARIKTWPGGSGYARKITFDQIILKDAQNPIIIDQNYGIKIPNA 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01409 319 Pfam Glycosyl hydrolases family 28 59 312 IPR000743 GO:0004650|GO:0005975
Cca01g01409 319 Gene3D - 18 319 IPR012334 -
Cca01g01409 319 ProSitePatterns Polygalacturonase active site. 237 250 IPR000743 GO:0004650|GO:0005975
Cca01g01409 319 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 4 315 - -
Cca01g01409 319 PANTHER - 4 315 - -
Cca01g01409 319 SUPERFAMILY Pectin lyase-like 23 313 IPR011050 -
Cca01g01409 319 SMART pbh1 260 281 IPR006626 -
Cca01g01409 319 SMART pbh1 180 206 IPR006626 -
Cca01g01409 319 SMART pbh1 207 228 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01409 Cca-Chr1 28651681 28674383 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01409 2 316 Glycoside Hydrolase AT5G27530 47.484 6.10e-89 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01409 K01184 - gmx:121174629 365.54