Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01097 ATGAGACAGAGGTTTCTTGGAACCCAAAACAAAATCTATAATGTGATGGATTATGGTGCTCAAGGTGATGGCAAATCTGATGATTCTGAGGCTTTTGTAAGTGCATGGAATGCTACGTGTGGAGCAGAAGAAGCATCAACTCTTCTTGTACCACCAAATGGAGAATTCATGGTAAAAGGCTTAAACTTTAGAGGTCCTTGCAATGCCACGAGTGTTAATATTCAGGTTCGAGGGAGAATAGTTGCACCTGCCATGAATGTATGGCTGAAAGGTCAAAAGACCAATTTGATTTCAATCTTTAACGTAAGTAGTCTCTCCATTGATGGGAGTGGAGGATCAATTGATGGCTATGGTTCTACTTGTCCAAAAGCTCACATAAGGGTCAATGGCTGTGAGGGTGCCACCTTCTCTAATGTCACCATTCATTCTCCTGGTGACAGCTCCAACACTGATGGAATTGATATTTTTACTTCCAAGAATATCTTGATTGAAAATTCCACTATAGCATGTGGTGATGATTGTATTGCCATCAGTGGTGGTTCTTCCAACATCAATGCCACTGGAATTGCTTGTGGACCAGGCCATGGAATAAGCATTGGCAGCCTTGGTAGAGACCAAACTTATGAAACAGTGGAAGAAGTTCATGTAAAAAATTGCAGCTTCACCAACACTACTAATGGAGCAAGAATCAAGACAGCCCCAGGTGGATCAGGTTATGCAAGAAACATTACTTTTGAGAACATCACATTAGTACAGGCTAACAACGCAATAATCATAGACCAGACTTATGGCAGTAAATATTCAACGAATGGATTATCATCACTGAACGTGAGTGATGTGACATTCCGTGGATTTAGTGGAACATCTGAAAAGGAGCTAGCTATTACCTTGAATTGCTCTCCACCAGGTTGTTTCAACATTGTGTTGGATCATATCAACATTGTCTCTGCTACACCAGAAAAACCAGCTACTTGTTCTTGCAATAATGCCCATGGAACAGCTACATACACTGTTCCAAATTGTTCTTTATCTTCATGA 1038 0.4075 MRQRFLGTQNKIYNVMDYGAQGDGKSDDSEAFVSAWNATCGAEEASTLLVPPNGEFMVKGLNFRGPCNATSVNIQVRGRIVAPAMNVWLKGQKTNLISIFNVSSLSIDGSGGSIDGYGSTCPKAHIRVNGCEGATFSNVTIHSPGDSSNTDGIDIFTSKNILIENSTIACGDDCIAISGGSSNINATGIACGPGHGISIGSLGRDQTYETVEEVHVKNCSFTNTTNGARIKTAPGGSGYARNITFENITLVQANNAIIIDQTYGSKYSTNGLSSLNVSDVTFRGFSGTSEKELAITLNCSPPGCFNIVLDHINIVSATPEKPATCSCNNAHGTATYTVPNCSLSS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01097 345 PANTHER - 11 120 - -
Spst4g01097 345 ProSitePatterns Polygalacturonase active site. 188 201 IPR000743 GO:0004650|GO:0005975
Spst4g01097 345 Pfam Glycosyl hydrolases family 28 122 332 IPR000743 GO:0004650|GO:0005975
Spst4g01097 345 Gene3D - 122 343 IPR012334 -
Spst4g01097 345 Gene3D - 6 121 IPR012334 -
Spst4g01097 345 SMART pbh1 131 157 IPR006626 -
Spst4g01097 345 SMART pbh1 240 261 IPR006626 -
Spst4g01097 345 SMART pbh1 211 232 IPR006626 -
Spst4g01097 345 SMART pbh1 158 179 IPR006626 -
Spst4g01097 345 SUPERFAMILY Pectin lyase-like 8 340 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01097 Spst-Chr4 43820013 43824294 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01097 11 335 Glycoside Hydrolase AT5G27530 45.170 6.99e-92 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01097 K01184 - gmx:100820332 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01097 4 43820013 43824294 Spst4g01097 4 43820013 43824294 ECH