Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01629 ATGCAAAGATTCATTACCTGTGTTTTGATTCTTTCTTTCATTTCACCTTGTATATGTATAAGATTGAAATATGTAACCCAAAATAATACTTATAATGTGATGCAATATGGTGCAATTGGCGATGGCAAATCTGATGATACACAAGCATTTTCAAAAGCATGGACTAGTGCCTGTAATGCAGGAGGAATGTCAACATTAGTTATACCATCGGAGAAATCATTCTTGGTGACCAAAGTAAACTTTAGTGGACCTTGCGATAGCACAATTCTCATTCAGATTGAAGGGAAAATAGTTGCGCCTGGTAAAGAAGAGTGGACATTTGAATCACGTTGGATTACTATTGAACATTTAAATGGACTCAAAATTGATGGCAATGGTCTAGGAGAAGTCGATGGAAATGGTTCTACTTGGTGGGATTGCCCAAAATGTGCTCGACCAGTGGTGTTTCATTTTCATTCATGCAATAATCTTACTGTTAGTAACCTGACTATCAGTAATAGTCCAAAAGCTCATGTATCTGTTAATAAGTGTAATGGTGCAACATTCTCTAATATATCCATTGATTCTCCTGCTCATAGTCCAAACACGGATGGATTTGACATTTCTGCTTCTACTAATATCTCTATACAAGATTCCAACATAAAATCTGGTGATGACTGTATTGCCATCAACGGTGGCTCATATTTTGTAAATGTTAATCGAGTTGTTTGTGGACCTGGCCATGGAATAAGTGTTGGTAGTCTTGGTAAAAATAATGCAACCGAACAAGTTTCTGATATTTATGTACGGAATTGCACTTTCACGGGATCTACTAATGGAGCAAGAATCAAGACAGTTTTGGGTGGATCGGGTTATGCAAAAAATATTACATATGAACAAATCATTCTTGAAAATGTTAAGAACCCAATAATCATAAATCAAGAATATAATAATTATTTGGAGGAAACATCATCTGTGTCGGTGAGTAATGTGACATTTCGAGGATTTAACGGAACTTATGTTGGCAAAGTAGCTATTAATTTAGATTGTAGTTCATCTGGTTGTTTAGACATTCTATTGGATCAAAACAACATTTTACCTGCTGAAAAAGGAGGGGCTGCTTCTGTTATTTGTAGAAATGCTCATGGAACAGCTAGAGATACTATTCCACAAGTCTATTGTCTTTCTGAATAA 1173 0.3564 MQRFITCVLILSFISPCICIRLKYVTQNNTYNVMQYGAIGDGKSDDTQAFSKAWTSACNAGGMSTLVIPSEKSFLVTKVNFSGPCDSTILIQIEGKIVAPGKEEWTFESRWITIEHLNGLKIDGNGLGEVDGNGSTWWDCPKCARPVVFHFHSCNNLTVSNLTISNSPKAHVSVNKCNGATFSNISIDSPAHSPNTDGFDISASTNISIQDSNIKSGDDCIAINGGSYFVNVNRVVCGPGHGISVGSLGKNNATEQVSDIYVRNCTFTGSTNGARIKTVLGGSGYAKNITYEQIILENVKNPIIINQEYNNYLEETSSVSVSNVTFRGFNGTYVGKVAINLDCSSSGCLDILLDQNNILPAEKGGAASVICRNAHGTARDTIPQVYCLSE 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01629 390 PANTHER - 28 376 - -
Vifa4g01629 390 SUPERFAMILY Pectin lyase-like 20 388 IPR011050 -
Vifa4g01629 390 ProSitePatterns Polygalacturonase active site. 234 247 IPR000743 GO:0004650|GO:0005975
Vifa4g01629 390 Gene3D - 19 387 IPR012334 -
Vifa4g01629 390 Pfam Glycosyl hydrolases family 28 58 375 IPR000743 GO:0004650|GO:0005975
Vifa4g01629 390 SMART pbh1 154 176 IPR006626 -
Vifa4g01629 390 SMART pbh1 204 225 IPR006626 -
Vifa4g01629 390 SMART pbh1 257 278 IPR006626 -
Vifa4g01629 390 SMART pbh1 286 307 IPR006626 -
Vifa4g01629 390 SMART pbh1 177 203 IPR006626 -
Vifa4g01629 390 SMART pbh1 316 343 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01629 Vifa-Chr4 468867211 468869891 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01629 1 380 Glycoside Hydrolase AT5G27530 44.388 1.42e-98 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01629 K01184 - mtr:25500200 462.996