Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0820 ATGGATCTTGCCATGCCAACTTCACTCTTCTCAAACATGCAAAGACTAATGACTATTCTTTTGATCCTTGGTTTTGTTTCACCATGTTCATGTGTGAGGTGGAGAGTTAGTACCCAAACCAATACTTATAATGTGATAGACTACGGTGCTCATGGTGATGGCAAATCTGATGATTCTGAGGCTTTTCTAAGTGCATGGAAAGACACATGTGGAGCACAACAAACAGGAACCCTAGTTATACCACCAAAAGGAGAATTCTTGCTAAATTACATAACGCTCAACGGTCCTTGCAATGCCCCAAGTGTTAATATTCAGCTTCAAGGGAAAATAGTTGCAGCTGGGAAGAATGAGTGGATAAAAGTGTCAGAAATCAAAAACCCCAAAACAAAAGGTCTCACAAATGAAACGTCCAATTTGATAGTAATATCAAACGTAACTAATCTGTCAATTGATGGAAGTGGAGGATCAATCGATGGCTATGGTTCTACTTGGTGGAACTGCCAATCTTGCGAACGACCAACGATTCTGAGATTCAAATTTTGTAATGATCTTACTGTTAGTAATCTGACCATTACTAACAGCCCAAAAGCTCACATAAGAATAAATAGTTGTGAGAATGCCACATTCTCTGATATCAGCATTCGTTCTCCTGGTGACAGCCCCAACACTGATGGATTCGACATTTACACTTCCAAAAACATTTTGATTCAAAATTCCACTATACAATGTGGTGATGATTGCATAGCAATCAGTGGTGGCTCTTCCAACATCAGTGCTACTGGAATTGCTTGTGGACCAGGCCATGGAATAAGCATTGGCAGCCTGGGTAGAAACAAAGCGTATGATACAGTGGAAGAAGTTCTTGTAAAAAATTGCACTTTCACAAACACTGAAAATGGAGCAAGAATTAAGACAGTCCCAGGTGGATCAGGTTATGCAAGAAATATCACTTTTGAGAACATCACAATAATAGATGCTGACAACCCAATAATTATAGATCAGTACTATGATAGTTATGGAAAAGCAGAGAGTGGAGCATTGAATGTGAGCGATGTGATATTCCGTGGATTTAGTGGCACATCTGCAAAGGAGAAAGCTATTACCCTGAATTGCTGTCCATCAGGTTGTTTCGACATTGTATTGGATCATGTTGACATTGTCTCGTCTAAACCTGGAAAACCAGCTTCTTGTTCTTGCAATAATGCTCATGGGAAAGCTACAAACACGGTTCCAGAATGTTCTTTATCGTCATAA 1254 0.3963 MDLAMPTSLFSNMQRLMTILLILGFVSPCSCVRWRVSTQTNTYNVIDYGAHGDGKSDDSEAFLSAWKDTCGAQQTGTLVIPPKGEFLLNYITLNGPCNAPSVNIQLQGKIVAAGKNEWIKVSEIKNPKTKGLTNETSNLIVISNVTNLSIDGSGGSIDGYGSTWWNCQSCERPTILRFKFCNDLTVSNLTITNSPKAHIRINSCENATFSDISIRSPGDSPNTDGFDIYTSKNILIQNSTIQCGDDCIAISGGSSNISATGIACGPGHGISIGSLGRNKAYDTVEEVLVKNCTFTNTENGARIKTVPGGSGYARNITFENITIIDADNPIIIDQYYDSYGKAESGALNVSDVIFRGFSGTSAKEKAITLNCCPSGCFDIVLDHVDIVSSKPGKPASCSCNNAHGKATNTVPECSLSS* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0820 417 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 13 413 - -
Vra9g0820 417 SUPERFAMILY Pectin lyase-like 34 411 IPR011050 -
Vra9g0820 417 SMART pbh1 231 252 IPR006626 -
Vra9g0820 417 SMART pbh1 181 203 IPR006626 -
Vra9g0820 417 SMART pbh1 204 230 IPR006626 -
Vra9g0820 417 SMART pbh1 313 334 IPR006626 -
Vra9g0820 417 SMART pbh1 284 305 IPR006626 -
Vra9g0820 417 PANTHER - 13 413 - -
Vra9g0820 417 Pfam Glycosyl hydrolases family 28 70 405 IPR000743 GO:0004650|GO:0005975
Vra9g0820 417 Gene3D - 28 415 IPR012334 -
Vra9g0820 417 ProSitePatterns Polygalacturonase active site. 261 274 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0820 Vra-Chr9 9580082 9582682 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0820 43 408 Glycoside Hydrolase AT5G44840 41.823 8.61e-93 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0820 K01184 - gmx:100820332 456.832