Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01849 ATGCAAAGCATAATCACTTTGGCTTTGATTCTTGCTTTAATTTCACCATGTTTTGGAAGCAATGACACATTTTATAATGTGATGGATTTTGGTGCTGTGGGAGATGCCAAAACAGATGATTCACAAGCATTTTTGAAAGCATGGCGAAGGACGTGTGGAGCGGAAGGGACACCAACCCTACTTATTCCATCAAACTATGTATTCTTATTGTCTGCCCTATTCCTAAAGGGTCCTTGCAACGCCACAACTATTCTAATTAAGCTTGAAGGGAAAATAGTTGCACCTACCAAGGATGCATGGGTAGTAGGTCATAAGAATAGTTTGATTTCTATCATAAAGGTAGAGAGACTCACAGTGGATGGAAGTGGAGGATTGATCGATGGCTTGGGTTCTTCTTGGTGGCCATGCAAAAGTTGTCCACGACCAGCAGTTCTTATCTTCGAAGCATGCAATTATCTTACTGTTCACGACTTGAGCATCATTAATAGTCCAAAATCTCACATACACGTACATGGTTGTGAAGATGCTATATTCTCTCATATCAATATCACTGCTCCTGCTACAAGTCCTAACACTGATGGAATTGACGTTACTTATTCCAAAAATATCTTCATTCAGAATTCCACTATACAAAGTGGTGATGATTGTATTGCTGTTAGTGGTGGCTCCGTTGCAGTCAATGTTACTGGGATTGCATGTGGACCAGGCCATGGCATAAGCATTGGAAGCCTAGGTAAAAGGAATGATACAGTGGAAGAAGTGAATGTACGAAATTGCAGCTTCACAAAAACTAAATATGGAGCAAGAATCAAGACATTTCCGGTTGGATTTGGTTGTGCAAGGCAAATCACATTTGAGGAAATAACGTTAGTAGAAACCCGTTACCCAATACTTATTGATCAAAACTATGGCAGTTATTATTTAACGAATGGAGGAGGAGTAGAAATAAGTGGGGTGAGATTCCGAGGATTTGAAGGAACATCCTTTGATGGCAGAGCTATTACCTTAGATTGTGGACAATTAGGTTGCCACGACATCGAATTGGATCAAATCAACATTGTTTCTTCTTTTCCAGCAAAGCCAGCCTATTGTTCTTGCAATAATGCTCATGGAACAGTTACATCAACTGTTCCAAATTGTTCTTGCTTGTTGCCATGA 1158 0.3998 MQSIITLALILALISPCFGSNDTFYNVMDFGAVGDAKTDDSQAFLKAWRRTCGAEGTPTLLIPSNYVFLLSALFLKGPCNATTILIKLEGKIVAPTKDAWVVGHKNSLISIIKVERLTVDGSGGLIDGLGSSWWPCKSCPRPAVLIFEACNYLTVHDLSIINSPKSHIHVHGCEDAIFSHINITAPATSPNTDGIDVTYSKNIFIQNSTIQSGDDCIAVSGGSVAVNVTGIACGPGHGISIGSLGKRNDTVEEVNVRNCSFTKTKYGARIKTFPVGFGCARQITFEEITLVETRYPILIDQNYGSYYLTNGGGVEISGVRFRGFEGTSFDGRAITLDCGQLGCHDIELDQINIVSSFPAKPAYCSCNNAHGTVTSTVPNCSCLLP 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01849 385 PANTHER - 23 372 - -
Phco1g01849 385 SMART pbh1 311 338 IPR006626 -
Phco1g01849 385 SMART pbh1 173 199 IPR006626 -
Phco1g01849 385 SMART pbh1 200 221 IPR006626 -
Phco1g01849 385 SMART pbh1 280 301 IPR006626 -
Phco1g01849 385 SMART pbh1 251 272 IPR006626 -
Phco1g01849 385 Pfam Glycosyl hydrolases family 28 52 371 IPR000743 GO:0004650|GO:0005975
Phco1g01849 385 SUPERFAMILY Pectin lyase-like 12 383 IPR011050 -
Phco1g01849 385 ProSitePatterns Polygalacturonase active site. 230 243 IPR000743 GO:0004650|GO:0005975
Phco1g01849 385 Gene3D - 18 381 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01849 Phco-Chr1 58083511 58088303 Proximal