Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1646 ATGCCACCATGTTTATGTGATCATAGTGTTGGAACCAACACAATTTCTAATGTGATAAATTATGGTGCTAAGGGAGATGGCACGTCAGATGATTCACAAGCATTTCTAAAAGCATGGCAAAGCACGTGTAGAACAAAAGGGACATCAACTCTATTAATACCACCAAACAAAGTATTCTTGGTGACGAGCTTAATCCTAAAGGGTCCTTGCTCTGCCACAAGTATTCAAATTCAGATTCAAGGGAAAATAGTTGCACCTGCAAAAGATGGATGGGTAGGATATAAGTATACTTGGATTTTGATCTCAAATGTAAATGGTCTCACAATTGATGGAAGTGAAGGATTACTAGATGGCTCTGGTAATACTTGGTGGCCATGCAAAATCATTAATAGTCCAAAAGCTCACATATGCATAAATCAATGTCAGGGTGCTACATTCTCTAATATTAACATTCAAGCTCCTGGTACTAGTCCCAACACAGATGGAATTGACATTAATAATTCTCAGAATATCATAATAAAAGATTCCATTATAGCATCTGGCCATGGAATAAGGTAA 558 0.371 MPPCLCDHSVGTNTISNVINYGAKGDGTSDDSQAFLKAWQSTCRTKGTSTLLIPPNKVFLVTSLILKGPCSATSIQIQIQGKIVAPAKDGWVGYKYTWILISNVNGLTIDGSEGLLDGSGNTWWPCKIINSPKAHICINQCQGATFSNINIQAPGTSPNTDGIDINNSQNIIIKDSIIASGHGIR 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1646 185 Pfam Glycosyl hydrolases family 28 127 181 IPR000743 GO:0004650|GO:0005975
Aed2g1646 185 Pfam Glycosyl hydrolases family 28 43 126 IPR000743 GO:0004650|GO:0005975
Aed2g1646 185 Gene3D - 7 127 IPR012334 -
Aed2g1646 185 Gene3D - 128 183 IPR012334 -
Aed2g1646 185 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 127 182 - -
Aed2g1646 185 SUPERFAMILY Pectin lyase-like 9 182 IPR011050 -
Aed2g1646 185 PANTHER - 127 182 - -
Aed2g1646 185 PANTHER - 11 127 - -
Aed2g1646 185 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 11 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1646 Aed-Chr2 20825692 20828830 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1646 15 181 Glycoside Hydrolase AT5G27530 45.652 3.81e-40 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1646 K01184 - gmx:100801217 285.419