Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01565 ATGGATCTTGCCATGCCAACTTCACTCTTCTCAAACATGCAAAGACTAATGACTTTTCTTTTGATTCTTGGTTTTGTTTCACCATGTTCATGTGTGAGGTGGAGAGTTAGTACCCAAACCAATACTTATAATGTGATAGACTACGGTGCTCATGGTGATGGCAAATCTGATGATTCTGGGGCTTTTCTAAGTGCATGGAAAGACACATGTGGAGCACAACAAACAGCAACCCTAGTTATACCACCAAAAGGAGAATTCTTGCTAAATTACATAACGCTCAACGGTCCTTGTAATGCCCCAAGTGTTAATATTCAGCTTCAAGGGAAAATAGTTGCAGCTGGGAAGAGTGAATGGATAAAAGTGTCAGAACTCAAAAACCCTAAAACAAAAGGTCTCACAAATGAAACGTCCAATTTGATAGTAATATCAAACGTAACTAATCTCTCAATTGATGGAAGTGGAGGATCAATCGATGGCTATGGTTCTACTTGGTGGAACTGCCAATCTTGCGAACGACCAACGATTCTGAGATTCAAATTTTGTAATGATCTTACTGTTAGTAATCTGACCATCACTAACAGCCCAAAAGCTCACATAAGAATAAATAGTTGTGAGAATGCCACATTCTCTGATATCAGCATTCGTTCTCCTGGTGACAGCCCCAACACTGATGGATTCGACATTTACACTTCCAAAAACATTTTGATTCAAAATTCCACTATTCAATGTGGTGATGATTGCATAGCCATCAGTGGTGGCTCTTCAAACATCAGTGCTACTGGAATTGCTTGTGGACCAGGACATGGAATAAGAAACAAAGCGTATGATACAGTGGAAGAAGTTCTTGTAAAAAATTGCACTTTCACAAACACTGAAAATGGAGCAAGAATTAAGACAGTCCCAGGTGGATCAGGTTATGCAAGAAAGATCACTTTTGAGAACATCACATTAATAGATAGTGACAACCCAATAATTATAGATCAGTACTATGGAAGTTATGGAAAACCAGAGAGTGGAGCATTGAATGTGAGTGATGTGATATTCCGTGGATTTAGTGGCACATCTGCAAAGGAGAAAGCTATTACCCTGAATTGCTCTCCATCAGGTTGTTTCGACATTGTATTGGATCATGTTGACATTGTCTCCTCTAAACCTGGAAAACCAGCTTCTTGTTCTTGCAATAATGCTCATGGGAAAGCTACAGACACTGTTCCACAATGTTCTTTATCGTCATAA 1236 0.3924 MDLAMPTSLFSNMQRLMTFLLILGFVSPCSCVRWRVSTQTNTYNVIDYGAHGDGKSDDSGAFLSAWKDTCGAQQTATLVIPPKGEFLLNYITLNGPCNAPSVNIQLQGKIVAAGKSEWIKVSELKNPKTKGLTNETSNLIVISNVTNLSIDGSGGSIDGYGSTWWNCQSCERPTILRFKFCNDLTVSNLTITNSPKAHIRINSCENATFSDISIRSPGDSPNTDGFDIYTSKNILIQNSTIQCGDDCIAISGGSSNISATGIACGPGHGIRNKAYDTVEEVLVKNCTFTNTENGARIKTVPGGSGYARKITFENITLIDSDNPIIIDQYYGSYGKPESGALNVSDVIFRGFSGTSAKEKAITLNCSPSGCFDIVLDHVDIVSSKPGKPASCSCNNAHGKATDTVPQCSLSS 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01565 411 SMART pbh1 307 328 IPR006626 -
Vimu9g01565 411 SMART pbh1 278 299 IPR006626 -
Vimu9g01565 411 SMART pbh1 231 252 IPR006626 -
Vimu9g01565 411 SMART pbh1 181 203 IPR006626 -
Vimu9g01565 411 SMART pbh1 204 230 IPR006626 -
Vimu9g01565 411 Pfam Glycosyl hydrolases family 28 70 399 IPR000743 GO:0004650|GO:0005975
Vimu9g01565 411 Gene3D - 28 410 IPR012334 -
Vimu9g01565 411 PANTHER - 40 398 - -
Vimu9g01565 411 SUPERFAMILY Pectin lyase-like 34 406 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01565 Vimu-Chr9 24868487 24871505 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01565 5 407 Glycoside Hydrolase AT5G17200 37.500 8.64e-88 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01565 K01184 - gmx:100820332 450.284