Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01551 ATGCTTTGTTTTCTCATATTACATGCATATTGCTCTGTCAAAACTTCATTATTCCTAAACATGCAGAGACTAATAATCACTTGTGTTTTGATTCTTTTCTTTGTTTCACCATGTTTTTGTAAGAGGTTCTTCATGGCATCTTCCAACACATACAATGTGATTGATTATGGTGCTAAAGGAGATGGTGAAACTGATGACTCCCAGGCATTCTTAAGTGCATGGAAAAAGACTTGTTCGACAGATGGTGAATCAACCCTAGTTATACCATCAAAAGGAGTATTTTTACTGAAGAAGAACATACTCTTGAAAGGTCCTTGCCAAGCCAAAAACATTCAAATTCAGCTTGAAGGAAAAATAATTGTAGCAAGCCAGGATGCATGGCTAGGTGATAAATCTTCGATAATTTGGATCTCAAACGTGAATGGTCTCACGATTGATGGAAGTGGAGGATTAATCGATGGCCTCGGTTCTTCTTGGTGGACATGCAACTGTCAACGACCATCGGTCCTTGCTTTCAATTCATGCAATGGTCTCATTGTTAGTTCCTTGAGCATCACAAATAGTCCACATGCTCACATAACCATAAATGGTTGTGAGGGTGCCACGTTCTCCAATATTAACATTAAATCTCCTGGTGATAGCCCTAACACCGATGGAATCGACATTTCTTCTTCCAAAAGAATCTTGATAAAAGATTCCAACATAGCTTGTGGTGATGACTGTATTGCAATCATAGGTGACTCTTCTGACGTTAATGCCACTGGAATTGCCTGTGGACCAGGCCATGGAATAAGCATTGGAAGCTTGGGTAAAAACAATGGCCATGACAAAGTGGAACAAGTTTATGTATATGATTGCAGCTTCACGAATACTCAAAATGGAGCAAGAATCAAGACATTAAAGAATGGACCAGGTTATGCCAGAAACATCACTTATGAGAAAATTACATTAACACAAACATACCACCCAATACTTATAGATCAAAACTACGTCGGTGTAGAGAGTGAAGGAGGAGTTGAAGTGAGTGGGGTGACATTTCGAGGGTTTCAAGGAACATCAGCAGATGACAGAGCTATTACCTTAGCTTGCAGTTCAAAAGGTTGTTTCGACATTGTGTTGGATCAAGTTGACATTAAATCTTCCAAAGCAGGAAAACCAGCAGCTTGTTCTTGCAGTAATGCCCATGGAACAGCTACATCCACAGTTCCAAAATGTGTCTCCTTATCTTAA 1230 0.3951 MLCFLILHAYCSVKTSLFLNMQRLIITCVLILFFVSPCFCKRFFMASSNTYNVIDYGAKGDGETDDSQAFLSAWKKTCSTDGESTLVIPSKGVFLLKKNILLKGPCQAKNIQIQLEGKIIVASQDAWLGDKSSIIWISNVNGLTIDGSGGLIDGLGSSWWTCNCQRPSVLAFNSCNGLIVSSLSITNSPHAHITINGCEGATFSNINIKSPGDSPNTDGIDISSSKRILIKDSNIACGDDCIAIIGDSSDVNATGIACGPGHGISIGSLGKNNGHDKVEQVYVYDCSFTNTQNGARIKTLKNGPGYARNITYEKITLTQTYHPILIDQNYVGVESEGGVEVSGVTFRGFQGTSADDRAITLACSSKGCFDIVLDQVDIKSSKAGKPAACSCSNAHGTATSTVPKCVSLS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01551 409 Gene3D - 44 407 IPR012334 -
Vimu9g01551 409 ProSitePatterns Polygalacturonase active site. 255 268 IPR000743 GO:0004650|GO:0005975
Vimu9g01551 409 SUPERFAMILY Pectin lyase-like 39 406 IPR011050 -
Vimu9g01551 409 PANTHER - 48 397 - -
Vimu9g01551 409 SMART pbh1 278 299 IPR006626 -
Vimu9g01551 409 SMART pbh1 307 328 IPR006626 -
Vimu9g01551 409 SMART pbh1 198 224 IPR006626 -
Vimu9g01551 409 SMART pbh1 225 246 IPR006626 -
Vimu9g01551 409 SMART pbh1 336 363 IPR006626 -
Vimu9g01551 409 Pfam Glycosyl hydrolases family 28 78 396 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01551 Vimu-Chr9 24773580 24776807 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01551 21 406 Glycoside Hydrolase AT5G17200 39.100 1.03e-92 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01551 K01184 - gmx:100820332 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g01551 9 24773580 24776807 Vimu9g01551 9 24773580 24776807 ECH