Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01566 ATGGACTATGGAGCTCTTGGTGATGGCACAACTGATGATTCAAATGCAATTTCAAATGCATGGCAAGGTATGTGTGGAGAGGAAGAACCAGCAACTCTACTGATACCTTCTAACAAAATATTTTTGGTGAAAAGATTAAACCTAAATGGTCCATGCAAAGCTCCAAATGTTGGCATTAAGTTTGAAGGAAAGATAGTTGCTCCATCTATGAACGAATGGGTTGGTGATTCGTCCACATGGATTCAGATATTCTATGTAAATGGTCTGACAATTGAGGCTGAAGGAGGAATCATTGATGGCAATGGTTCGACTTGGTGGGAGAAATGCAGAACATGCAGAAGGCCAACATCCTTACGTTTCCATTCTTGTAATGGTCTTACTGTTAAATCTCTAAGTATGAGTAACAGCCCTGGAGCTCACATATCAGTAAATGGCTGCATTGGAGCATTATTCTCTCAGATCAATATCCATTCTCCTCCAAAAAGTCCTAACACTGATGGCTTTGACATTGCCAATTCCAAAAATATAGTAATCGAAGATTCTACTCTCGCAACAGGTGATGATTGTATTGCCATCAATGGTGGTTCTTCTTACATCAATGCAACTCGACTTTTTTGCATAGGAGGACACGGGATAAGCAGCATTGGAAGCCTTGGTAGAAATAAATCCTATGAGACAGTTGAAGAGGTACATATACAAAATTGCAGCTTCATTGGCACCACAAATGGAGCAAGAATCAAGACATGGCCTGGTGGATCAGGCTATGCAAGAAAAATCATGTTTGAGGAAATCATACTGCAAGATGCTCAAAATTCAATTATTATAGACCAATACTACGGCATTAAAACTCTAAGTGAAGTGGAAGATGATGCAGTGAGGGTGAGTGAAGTGACTTATAGAGGGTTCAATGGAACTTCTGCAAGTGAGAAAGCAATTGATTTGAACTGTACCCCATCTGGTTGTTTCAACATTACATTAGATCAGATTTATATTGTCTCTTCAAAATCTTCCAAACATGCCTATGCTTTTTGCAAAAATATTGTTAATGGGACGATTGGATGCACCGTTCCAAAAGCAATTTCAAATGCATGGCAAGATATGTGTAGAGAGGAAGGGCCAGCAACTCTACTGATACCTTCAAACAAAATATTTTTGGTGAAAAGATTAAACCTAAATGGTCCATGCAAAGCTCCAAATGTTGGCATTAAGTTTGAAGGAAAGATAGTTGCTCCATCTATGAACGAATGGGTTGGTGATTCGTCCACATGGATTCAGATATTCAATGTAAATGGTCTAACAATTGATGCTTATGGAGGAATCATTGATGGCAATGGTTCGACTTGGTGGGAGAAATGCAGAACATGCAGAAGGCCAACATCCTTAGGTTTCCAATCTTGTAATGGTCTTACTGTGAAGTCTCTGAGTATGAGTAACAGTCCCCAAGCTCACATAGCAGTAAATGGCTGCGATGGTGCATTATTCTCTCACATCAATATCAGTTCTCCTCCAAAAAGTCCTAACACTGATGGCTTTGACATTGCCAATTCCAAAAATATAGTAATCGAAGATTCTACTCTCGCAACAGGTGATGATTGTATTGCCATCAATGGTGGTTCTTCTTACATCAATGCAACTCGACTTTTTTGCATAGGAGGACACGGGATAAGCAGCATTGGAAGCCTTGGTAGAAATAAATCCCATGAGACAGTTGAAGAGGTACATGTACAAAATTGCAGCTTCATTGGCACCACAAATGGAGCAAGAATCAAAACATGGCCAGGTGGATCTGGCTATGCAAGAAAAATCACCTTTGAGGAAATCATACTACAAGATGCTCAAAATTCAATTATTATAGACCAATACTACGGCATTAAAACTCTAAGTGGAGTGGAAAATGATGCAGTGAGGGTGAGTGAAGTGACTTATAGAGGGTTCAATGGAACTTCTGCAAGTGAGAAAGCAATTAATTTGAACTGTAGCCCATCTGGTTGTTTCAACATTACAATGGATCAGATTTATATTGTCTCTTCAAAATCTTCCAAACATGCCTTTGCTTTTTGCAAGAATATTGTTAATGGGACGATTGGATCCACTATTCCAAAAAAAAACACTTATAATGTGATAGATTATGGTGCTCATGGTGATGGCAAGTCAGATGATTCCAGGGCTTTTGAGAGTGCATGGAAAGATACATGTGGAACAAAAGGAACACCAACTCTTATTATACCACAAAAAGGAGTATTCTTGCTGAAAGGCATAGCCTTCAATGGTCCTTGCAGTGCCACAAAAATTAATATTAAGCTTGAAGGAAAAATAGTTGCACCTAGAAAAGATGAAGGGCTAAAAGGTAGAAGTAATTTGATTGAAATCACAAACGTAACTAATCTCTCAATTGATGGGAGTGGAGGATCAATCGATGGTTATGGTTCTTCTTGGTGGGACTGCATACCATGTGGAAGACCAACGATTCTCAGATTCAAGTTTTGTAATGATCTTAGTGTTAGTCACGTGACCATCACCAACAGCCCAAAAGCTCACATAAGGATAAATAATTGTGAGAAAGCCACATTCTCTGATATCAGAATCGATTCTCCTGGTGACAGTTACAACACTGATGGAATCGACATTTTTGCTTCAAAAAATATCTTGATTGAAGATTCCACCATACGATGTGGTGATGATTGCATAGCCATCAGCGATGGCTCCTCTTACATCAATGCTACTCGAATTGCTTGTGGACCAGGCCATGGAATAAGAGACGGATCTCATGAAACAGTGGAAGAAGTTTATGTAAAAAATTGCAGCTTCAGCAACACTACAAATGGAGCAAGAATCAAGACAGCACCAGGTGGATCAGGTTATGCAAGACACATAACTTTTGAGGACATCAGATTAATGCACGTTATGAACCCAATTATTATAGATCAGACCTACGGCAGTAAAATTTCGAAGAGTAAAGGATTGGACGTGAGTGATGTGACATTTCGTGGATTCAATGGAACATCTGCAAGTGACGAAGCTATTACCTTGAATTGTGGTCTACCTGGTTGTTCCAACATTGAAAACGAGTTTCTTGTTCCTGCAACAATGCCCGTGGAACAGCTACATCCACTGATCCTAATTTCTATAGCCAGAAAGGAGGCTACGACCGAGAGAGCAACTACACATACTGTGCCTCTCACCGGTTCTTCCACTTCTAACTTCTTAGATCATCTTCTTCCTTCTCAAACGTCTACGAGCATAAGAGAGCTTGTTTCATGGAGCAGGTTGGTAAAACGCTATGCCACCGCCATTCGAGAGATTTCTCTCTTGAAAGAAATGCAGCACCGCAACATTGAATGTGGTGGTCGTCATTTGAACAATTCATGTGCTGACCAAGAATATTATATGGCTGGAGAGGGGGAGGAAGAAGGAGACGACGACCGCAAGGGAATCTGTCTTGATGGGGAAAGGGCCAAAACAAATAACAACTTATCAAAGTGTAATATCGCAGCGGAAATTCAATCCCCTTCTTGCGAGAATCTGCGAGGAGCACCAAACAAATAG 3546 0.4013 MDYGALGDGTTDDSNAISNAWQGMCGEEEPATLLIPSNKIFLVKRLNLNGPCKAPNVGIKFEGKIVAPSMNEWVGDSSTWIQIFYVNGLTIEAEGGIIDGNGSTWWEKCRTCRRPTSLRFHSCNGLTVKSLSMSNSPGAHISVNGCIGALFSQINIHSPPKSPNTDGFDIANSKNIVIEDSTLATGDDCIAINGGSSYINATRLFCIGGHGISSIGSLGRNKSYETVEEVHIQNCSFIGTTNGARIKTWPGGSGYARKIMFEEIILQDAQNSIIIDQYYGIKTLSEVEDDAVRVSEVTYRGFNGTSASEKAIDLNCTPSGCFNITLDQIYIVSSKSSKHAYAFCKNIVNGTIGCTVPKAISNAWQDMCREEGPATLLIPSNKIFLVKRLNLNGPCKAPNVGIKFEGKIVAPSMNEWVGDSSTWIQIFNVNGLTIDAYGGIIDGNGSTWWEKCRTCRRPTSLGFQSCNGLTVKSLSMSNSPQAHIAVNGCDGALFSHINISSPPKSPNTDGFDIANSKNIVIEDSTLATGDDCIAINGGSSYINATRLFCIGGHGISSIGSLGRNKSHETVEEVHVQNCSFIGTTNGARIKTWPGGSGYARKITFEEIILQDAQNSIIIDQYYGIKTLSGVENDAVRVSEVTYRGFNGTSASEKAINLNCSPSGCFNITMDQIYIVSSKSSKHAFAFCKNIVNGTIGSTIPKKNTYNVIDYGAHGDGKSDDSRAFESAWKDTCGTKGTPTLIIPQKGVFLLKGIAFNGPCSATKINIKLEGKIVAPRKDEGLKGRSNLIEITNVTNLSIDGSGGSIDGYGSSWWDCIPCGRPTILRFKFCNDLSVSHVTITNSPKAHIRINNCEKATFSDIRIDSPGDSYNTDGIDIFASKNILIEDSTIRCGDDCIAISDGSSYINATRIACGPGHGIRDGSHETVEEVYVKNCSFSNTTNGARIKTAPGGSGYARHITFEDIRLMHVMNPIIIDQTYGSKISKSKGLDVSDVTFRGFNGTSASDEAITLNCGLPGCSNIENEFLVPATMPVEQLHPLILISIARKEATTERATTHTVPLTGSSTSNFLDHLLPSQTSTSIRELVSWSRLVKRYATAIREISLLKEMQHRNIECGGRHLNNSCADQEYYMAGEGEEEGDDDRKGICLDGERAKTNNNLSKCNIAAEIQSPSCENLRGAPNK 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01566 1181 SMART pbh1 985 1012 IPR006626 -
Vimu9g01566 1181 SMART pbh1 829 851 IPR006626 -
Vimu9g01566 1181 SMART pbh1 489 515 IPR006626 -
Vimu9g01566 1181 SMART pbh1 173 194 IPR006626 -
Vimu9g01566 1181 SMART pbh1 955 976 IPR006626 -
Vimu9g01566 1181 SMART pbh1 570 591 IPR006626 -
Vimu9g01566 1181 SMART pbh1 599 620 IPR006626 -
Vimu9g01566 1181 SMART pbh1 516 537 IPR006626 -
Vimu9g01566 1181 SMART pbh1 926 947 IPR006626 -
Vimu9g01566 1181 SMART pbh1 879 900 IPR006626 -
Vimu9g01566 1181 SMART pbh1 852 878 IPR006626 -
Vimu9g01566 1181 SMART pbh1 227 248 IPR006626 -
Vimu9g01566 1181 SUPERFAMILY Pectin lyase-like 358 700 IPR011050 -
Vimu9g01566 1181 SUPERFAMILY Pectin lyase-like 698 1021 IPR011050 -
Vimu9g01566 1181 SUPERFAMILY Pectin lyase-like 2 359 IPR011050 -
Vimu9g01566 1181 ProSitePatterns Polygalacturonase active site. 546 560 IPR000743 GO:0004650|GO:0005975
Vimu9g01566 1181 ProSitePatterns Polygalacturonase active site. 203 217 IPR000743 GO:0004650|GO:0005975
Vimu9g01566 1181 Gene3D - 357 693 IPR012334 -
Vimu9g01566 1181 Gene3D - 694 1026 IPR012334 -
Vimu9g01566 1181 Gene3D - 1 356 IPR012334 -
Vimu9g01566 1181 PANTHER - 2 347 - -
Vimu9g01566 1181 Pfam Glycosyl hydrolases family 28 368 690 IPR000743 GO:0004650|GO:0005975
Vimu9g01566 1181 Pfam Glycosyl hydrolases family 28 732 1021 IPR000743 GO:0004650|GO:0005975
Vimu9g01566 1181 Pfam Glycosyl hydrolases family 28 25 347 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01566 Vimu-Chr9 24873949 24891805 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01566 358 697 Glycoside Hydrolase AT5G44840 42.029 2.83e-78 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01566 K01184 - mtr:25500200 701.049