Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0394 TGGAGTGTTAGAACCCAAAACAAAACTTATAATGTGATAGATTATGGTGCTCATGGTGATGGCAAATTAAATGATTCTGGGGCTTTTGTGAGTGCATGGAAAGACACATGTGGAACACAAGGGACACCAACTCTTCTTATACCACAAAATGGAGTATTCTTGCTGAAAGGCATAGCCCTCAATGGTCCTTGCAATGCCACAAATGTTAATATTAAGCTTGAAGGGAAAATAGTTGCACCTAGCAAGGATGAATGGGAAAAAGTTATGACAAGTAATTTGATTCTATTCTCAAACCTAAATGGTCTCTCAATTGATGGAAGTGGAGGATCAATCGAGGGCAATGGTTCTTCTTGGTGGGAATGCATAAGTTGTGGACGACCAACGATTCTTAGATTCAAATTTTGTAATGATCTTACTGTTAGTAATCTGAACATCACTAACAGCCCAAAAGCTCACATAAGGATAAATAACTGTGAGAATGCCACATTCTCTAATATCACCATTCATTCTCCTGGTGACAGCTTCAACACTGATGGAATTGACATTTTCACTTCCAAAAATATCTTGATTCAAGATTCCACCATACACTGTGGTGATGATTGTATCGCCATCAGTGGTGGCTCCTCTCACATCAATGCTACTGGAATTGCTTGTGGACCAGGCCATGGAATAAGCATTGGAAGCCTGGGTAGAGACGAATCTTATGAAACAGTGGAAGAGGTTTACGTAAGAAATTGCAGCTTCACCAACACTACAAATGGAGCAAGAATCAAGACAGCACCGACTAAAGCATTGAACGTGAGTGATGTGACATTCCGTGGATTTAATGGAACATCTGCAACTGCTGACGCAATTACCTTGAATTGCTCAGTACCTGGTTGTTTCAACATTGTACTGGATGATATTGACATTGTCTCCTCTCAGTCAGGAAAACCAGTTTCTTGTTCTTGCAACAATGCTCATGGAACTGTTACATCTACCAATCCAAATTGTATGAGTTTATTTCTCCTTCCATAA 1017 0.3982 WSVRTQNKTYNVIDYGAHGDGKLNDSGAFVSAWKDTCGTQGTPTLLIPQNGVFLLKGIALNGPCNATNVNIKLEGKIVAPSKDEWEKVMTSNLILFSNLNGLSIDGSGGSIEGNGSSWWECISCGRPTILRFKFCNDLTVSNLNITNSPKAHIRINNCENATFSNITIHSPGDSFNTDGIDIFTSKNILIQDSTIHCGDDCIAISGGSSHINATGIACGPGHGISIGSLGRDESYETVEEVYVRNCSFTNTTNGARIKTAPTKALNVSDVTFRGFNGTSATADAITLNCSVPGCFNIVLDDIDIVSSQSGKPVSCSCNNAHGTVTSTNPNCMSLFLLP* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0394 338 SMART pbh1 238 259 IPR006626 -
Pvu10g0394 338 SMART pbh1 185 206 IPR006626 -
Pvu10g0394 338 SMART pbh1 135 157 IPR006626 -
Pvu10g0394 338 SMART pbh1 158 184 IPR006626 -
Pvu10g0394 338 SMART pbh1 262 289 IPR006626 -
Pvu10g0394 338 ProSitePatterns Polygalacturonase active site. 215 228 IPR000743 GO:0004650|GO:0005975
Pvu10g0394 338 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 263 331 - -
Pvu10g0394 338 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 3 261 - -
Pvu10g0394 338 Pfam Glycosyl hydrolases family 28 37 272 IPR000743 GO:0004650|GO:0005975
Pvu10g0394 338 SUPERFAMILY Pectin lyase-like 3 330 IPR011050 -
Pvu10g0394 338 Gene3D - 1 334 IPR012334 -
Pvu10g0394 338 PANTHER - 263 331 - -
Pvu10g0394 338 PANTHER - 3 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0394 Pvu-Chr10 5505184 5512123 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0394 2 328 Glycoside Hydrolase AT5G44840 39.189 6.26e-80 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0394 K01184 - gmx:100820332 395.971