Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04564 ATGCAAGGGTTCATCACTTTTGCTTTGATTTTTGGTTTTATTTTACCTTGTCTATGCACAAGATCGAATGTTGGAACTAAAAATACTATTTATAATGTGATGCAATATGGCGCGCTTGGTGACGGCAAAACTGATGATTCATCGGCATTTTTTAGTGCATGGAGTAGTGCGTGTAAAGCAGTAGGGACGTCAACACTAGTTATACCAGCAGGTAAAATATTCATGGCGTCGAAAATACATTTTAGTGGTCCTTGCAGCGCCAAAATTCTCATCCAGCTTAAAGGGAAAATAGTTGCACCTTCTAAAGCAGCGTGGAAAGGTGGATCAGAATGGATTAGCGTTGAATATGTAAATGGACTCACAATTGATGGCAATGGCCAAGGAAGTGTCCTTGGAGATGGTCCTACTTGGTGGCAATGCCCCACTTGTAGTCGACCCACGATGTTGCATTTTCATTCTTGCAATGGTCTCAATGTTCGAAATTTGAGGATCTTAAATAGCCCAAGATCTCATGTTTCTGTTAATATGTGCAATCATGCAATATTTTCCTATATATCCATCAGTTCTCCTGCTACTAGCCCCAACACTGACGGGTTTGATATATCTCATTCCAATAATATCTTGATACAAGATTCCAACATAAAATCTGGTGACGATTGTATTGCCGTAAATGGTGGCTCCACTTTTGTCAATGCTACTCGGGTTACTTGTGGACCAGGCCATGGGATAAGTGTCGGTAGCCTTGGTGGAAATGGAGCAAATGATCAAGTTTCCGACGTTCATGTACGAAATTGCACCTTTATAGGGACTCAAAATGGAGCAAGAATCAAAACAGTTCCGGGTGGATCAGGTTATGCTAGACAAATTACATTTGAGCATATTGTGCTTGTCAATGTTATGAACCCGATAATAATAGATCAGGCTTACACTCTTAGTACACTGGATACAGCTGTGTCGGTGAGAGATGTGACATATCGAGGATTTACCGGAACTTCTTCTAGTGATATAGCAATTGATTTAAAGTGTAGTTCTTCTGGTTGTTTTAAGATTCTATTGGTTCAAAATAACATTGTTTCTGCACAACCAGGAAAGAAGACTTCCTCTTTTTGTAGAAATGCTCATGGAATAGTTAGAAATACTATTCCAAGTGTCCCTTGCCTATCTAATTAA 1170 0.3957 MQGFITFALIFGFILPCLCTRSNVGTKNTIYNVMQYGALGDGKTDDSSAFFSAWSSACKAVGTSTLVIPAGKIFMASKIHFSGPCSAKILIQLKGKIVAPSKAAWKGGSEWISVEYVNGLTIDGNGQGSVLGDGPTWWQCPTCSRPTMLHFHSCNGLNVRNLRILNSPRSHVSVNMCNHAIFSYISISSPATSPNTDGFDISHSNNILIQDSNIKSGDDCIAVNGGSTFVNATRVTCGPGHGISVGSLGGNGANDQVSDVHVRNCTFIGTQNGARIKTVPGGSGYARQITFEHIVLVNVMNPIIIDQAYTLSTLDTAVSVRDVTYRGFTGTSSSDIAIDLKCSSSGCFKILLVQNNIVSAQPGKKTSSFCRNAHGIVRNTIPSVPCLSN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04564 389 PANTHER - 28 375 - -
Mepo1g04564 389 Gene3D - 18 384 IPR012334 -
Mepo1g04564 389 Pfam Glycosyl hydrolases family 28 58 374 IPR000743 GO:0004650|GO:0005975
Mepo1g04564 389 SUPERFAMILY Pectin lyase-like 24 387 IPR011050 -
Mepo1g04564 389 SMART pbh1 320 342 IPR006626 -
Mepo1g04564 389 SMART pbh1 257 278 IPR006626 -
Mepo1g04564 389 SMART pbh1 286 307 IPR006626 -
Mepo1g04564 389 SMART pbh1 204 225 IPR006626 -
Mepo1g04564 389 SMART pbh1 177 203 IPR006626 -
Mepo1g04564 389 ProSitePatterns Polygalacturonase active site. 234 247 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04564 Mepo-Chr1 53452820 53462725 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04564 30 375 Glycoside Hydrolase AT5G27530 48.034 4.20e-103 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04564 K01184 - mtr:25500200 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g04564 1 53452820 53462725 Mepo1g04564 1 53452820 53462725 ECH