Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0389 ATGCAAAGCATAATCACTTTGGCTTTGATTCTTGCTCTAATCTCACCATGTTTTGGAAGCAATTACACATTTTATAATGTGATGGATTTTGGTGCTGTGGGAGATGCCAAAACAGATGATTCACAAGCATTTTTGAAAGCATGGCGAAGTACGTGTGGAGCGGAAGGGACACCAACCCTACTTATTCCACAAAACTATGTATTCTTATTGTCTGCCCTACTCCTAAAGGGTCCTTGCAACGCCACAACTATTCTAATTAAGCTGGAAGGGAAAATAGTTGCACCTGCCAAGGACGCATGGGTAGGTCATACGAATAGTTTGATTTCCATCGTAAAGGTAGAGAGACTCACAGTGGATGGAAGTGGAGGATTAATCGATGGCTTCGGTTCTTCTTGGTGGCCATGCAAATATTGTCCACGACCAGCAACTCTTATTTTCGACGCATGCAACTATCTTACAGTGCATGACTTGAGCATCACTAATAGTCCAAAATCTCACATACACGTGCATGGTTGCAAAGATGCTACATTCTCTCATATCAATATCACTGCTCCTGCTGATAGTCCTAACACTGATGGAATTGACGTTACTTCTTCCAAAAATATCGTGATTCAGAATTCCACCATACAAAGTGGTGATGATTGTGTTGCTGTTAGTGGTGGCTCCGTTGCAGTCAATGTTACTGGGATTGCATGTGGACCAGGCCATGGCATAAGCATTGGAAGCCTAGGTAAAAGGAATGATACAGTGGAAGAAGTGTATGTACGAAATTGCAGCTTCACAAAAACTAGATATGGAGCAAGAATCAAGACATTTCCTATTGGGTTTGGTTGTGCAAGGAAAATCACATTTGAGGAAATAACGTTAGTAGAAACCCGTTACCCAATACTTATTGATCAAAACTATGGCACTTATTATTTAACGAATGGAGGAGGAGTAGAAATAAGTGGGGTGAGATTCCGAGGATTTCAAGGAACATCCTTTGATGGCAGAGCTATTACCTTAGATTGTGGACAACTAGGTTGCCACGACATCGAATTGGATCAAATCGACATTTCTTCTTCTCCAGCAAAGCCAGCCTATTGTTTTTGCAATAATGCTCATGGAACAGTTACATCAACTGTTCCAAATTGTTCTTGCTTATTGCCATGA 1152 0.4115 MQSIITLALILALISPCFGSNYTFYNVMDFGAVGDAKTDDSQAFLKAWRSTCGAEGTPTLLIPQNYVFLLSALLLKGPCNATTILIKLEGKIVAPAKDAWVGHTNSLISIVKVERLTVDGSGGLIDGFGSSWWPCKYCPRPATLIFDACNYLTVHDLSITNSPKSHIHVHGCKDATFSHINITAPADSPNTDGIDVTSSKNIVIQNSTIQSGDDCVAVSGGSVAVNVTGIACGPGHGISIGSLGKRNDTVEEVYVRNCSFTKTRYGARIKTFPIGFGCARKITFEEITLVETRYPILIDQNYGTYYLTNGGGVEISGVRFRGFQGTSFDGRAITLDCGQLGCHDIELDQIDISSSPAKPAYCFCNNAHGTVTSTVPNCSCLLP* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0389 383 SUPERFAMILY Pectin lyase-like 13 381 IPR011050 -
Pvu10g0389 383 SMART pbh1 199 220 IPR006626 -
Pvu10g0389 383 SMART pbh1 279 300 IPR006626 -
Pvu10g0389 383 SMART pbh1 149 171 IPR006626 -
Pvu10g0389 383 SMART pbh1 250 271 IPR006626 -
Pvu10g0389 383 SMART pbh1 310 337 IPR006626 -
Pvu10g0389 383 SMART pbh1 172 198 IPR006626 -
Pvu10g0389 383 Gene3D - 19 379 IPR012334 -
Pvu10g0389 383 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 5 381 - -
Pvu10g0389 383 PANTHER - 5 381 - -
Pvu10g0389 383 Pfam Glycosyl hydrolases family 28 52 368 IPR000743 GO:0004650|GO:0005975
Pvu10g0389 383 ProSitePatterns Polygalacturonase active site. 229 242 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0389 Pvu-Chr10 5466888 5471446 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0389 18 378 Glycoside Hydrolase AT5G17200 42.159 4.25e-96 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0389 K01184 - gmx:100820332 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0389 10 5466888 5471446 Pvu10g0389 10 5466888 5471446 ECH