Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0395 ATGCAAAGGTTAATCACTTGTATCTTGATTCTAGGTTTTATTTCAGCCACATTCAGCAATGCTGAAACCCAAGTAAAATATTTTAATGTGATGGATTTTGGAGCTCATGGTGATGGCACAAGTGATGATTCAAATGCAATTGCAAAAGCATGGCAAGGTGTGTGTGGAGAGGAAGGGCCAGCAAGTCTACTTATACCTTCAAGAAAAATATTTTTGGTGAAAAGATTAAAGCTAAGTGGTCCATGCAAGACCCCAAATGTTGGCATTAAGTTGAAAGGGAAAATAGTAGCTCCATCTATGAGTAAATGGGTTGGTGATTCTTTTAGTTGGATTCAGATATTATATGTAAATGGTCTAACAATTGATGGTGATGGAGGAAGCATTGATGGCCATGGTTCTACTTGGTGGGAGAAATGCAGAAAATGCAGAAGACCAAAATCCTTGCGTTTCCATGCTTGCAATGGTCTTACTGTGAAATCTCTGAGTATGAGGAACAGCCCTGGAGCTCACATATCTGTAAATGGCATGGATGGTGCACTCTTCTCTCAAATCAATATCAATTCTCCTCCAGATAGCCCTAACACTGATGGCTTTGACATTGCTGCTTCAAAAAATGTAGCAATTCAAGATTCCACTCTTGCAACAGGTGATGATTGTATTGCCATCAATGGTGGTTGTTCTAATATCAAAGCCACTAGACTTGTTTGCCAAGGAGGCCATGGGATAAGCATTGGAAGCCTTGGTAGAAATAAATCTCATGAGACAGTTGAAGAGGTACATGTAAGGAATTGCACCTTCATTGGCACCACAAATGGTGCAAGAATCAAGACATGGCCGGGTGGATCAGGCTATGCAAGAAAAATCACATATGAGGGAATCATACTAAAAGATGTTAAAAATTCAATTATTATAGACCAATACTATGGCATTAAAACTCCAAATGAAGTGCCAAATAAAGTGGAAGATGCAGTGAAGGTGAGTGAAGTGATATACAGAGGGTTCAAGGGCACTTCTGCTAGTGCCAAGGCAATTAACTTGAACTGTAGCCCATCTGGGTGTTTCAACATTACATTGGATCAAATTTACACTGTCCATTCAAAATCAATCAAAAAAGCCTATGCATTTTGCAAGAATATTGTTAATGGGAGGATTGGATACACTGTTCCAAAAGTATCTTGTGCATAA 1185 0.3907 MQRLITCILILGFISATFSNAETQVKYFNVMDFGAHGDGTSDDSNAIAKAWQGVCGEEGPASLLIPSRKIFLVKRLKLSGPCKTPNVGIKLKGKIVAPSMSKWVGDSFSWIQILYVNGLTIDGDGGSIDGHGSTWWEKCRKCRRPKSLRFHACNGLTVKSLSMRNSPGAHISVNGMDGALFSQININSPPDSPNTDGFDIAASKNVAIQDSTLATGDDCIAINGGCSNIKATRLVCQGGHGISIGSLGRNKSHETVEEVHVRNCTFIGTTNGARIKTWPGGSGYARKITYEGIILKDVKNSIIIDQYYGIKTPNEVPNKVEDAVKVSEVIYRGFKGTSASAKAINLNCSPSGCFNITLDQIYTVHSKSIKKAYAFCKNIVNGRIGYTVPKVSCA* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0395 394 Pfam Glycosyl hydrolases family 28 55 380 IPR000743 GO:0004650|GO:0005975
Pvu10g0395 394 Gene3D - 14 391 IPR012334 -
Pvu10g0395 394 ProSitePatterns Polygalacturonase active site. 233 246 IPR000743 GO:0004650|GO:0005975
Pvu10g0395 394 PANTHER - 1 389 - -
Pvu10g0395 394 SUPERFAMILY Pectin lyase-like 17 393 IPR011050 -
Pvu10g0395 394 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0395 Pvu-Chr10 5527825 5532170 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0395 1 361 Glycoside Hydrolase AT5G44840 41.257 1.20e-92 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0395 K01184 - gmx:100820332 389.423