Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00339 ATGCCAACTTCCTCAAACATGCAAAGACTAATCACTTGTCTTTTGATTCTTTGTTTTGTTTCACCATGTTTGTGTGCGAGGTCCACACTTACTACCAAAAGCAATACTTATAATGTCAAAGACTATGGTGCTCATGGCGATGGCAAATCTGATGATTCTGGGGCTTTTCTAAGTGCATGGAAAGATACGTGTGGAGCACAAGAAACACCAACCCTAGTTATACCATCAGAAGGAGTATTCTTGCTAAATTACATAACCCTCAATGGTCCTTGCAATGCCCCAAGTGTTAATATTCAGCTTCAAGGGAAAATAGTTGCATCTGCGAAGAAGGAATGGATAAAAGTGTCAGAAATCCAAAACCCTAACACAAAAGGTCTCACAAATGATACCTCCAATTTGATTGTATTCTCAAACGTTACTAATCTCTCAATTGATGGAAGTGGAGGATCAATCGATGGCTATGGTTCTTCTTGGTGGGAATGCAAAAGTTGTGGAAGACCAACGATTCTCAGATTCAAATCTTGCAATGATCTTACTGTTAGCAATTTGACCATCACTAACAGCCCAAAAGCTCACATAAGATTAAATAGTTGTGACAATGCCACATTCTCTGATATCAACATTCGTGCTCCTGGTGACAGCCCCAACACTGATGGATTCGACATTTACACTTCCAAAAACATCTTGATTCAAAATTCCAACATACAATGTGGTGATGATTGCATAGCCATCAGTGATGGCTCCTCTAACATCAATGCTACTGGAATTGCTTGTGGACCAGGCCATGGAATAAGCATTGGCAGCCTGGGTAGAAGCAACGCTCATGAAACAGTGGAAACAGTTCATGTAAAAAACTGCACTTTCACAAACACTAAAAATGGAGCAAGAATTAAGACAGTCCCGGGTGGATCAGGTTATGCAAGAAACATCATTTTCGAGAACATCACATTAATAAATGCAGATAACCCAATAATCATAGACCAGTACTATGACAGTTATGGAAAATCAGAGAGTGGAGCATTGAATGTGAGCGATGTGACATTCCGTGGATTTAGTGGAACAGCTGCAAAGCAGAAAGCTATTACTCTGAATTGCTGTCCATCAGGGTGTTTCGACATTGTATTGGATCATGTTGACATTGTCCCTTCTACACCAGGAAAAACAGCTTCTTGTTCTTGCAATAATGCTCATGGAAAATCTACAGAAACTGTTCCACAATGTTCCTTATCATCATAA 1236 0.3981 MPTSSNMQRLITCLLILCFVSPCLCARSTLTTKSNTYNVKDYGAHGDGKSDDSGAFLSAWKDTCGAQETPTLVIPSEGVFLLNYITLNGPCNAPSVNIQLQGKIVASAKKEWIKVSEIQNPNTKGLTNDTSNLIVFSNVTNLSIDGSGGSIDGYGSSWWECKSCGRPTILRFKSCNDLTVSNLTITNSPKAHIRLNSCDNATFSDINIRAPGDSPNTDGFDIYTSKNILIQNSNIQCGDDCIAISDGSSNINATGIACGPGHGISIGSLGRSNAHETVETVHVKNCTFTNTKNGARIKTVPGGSGYARNIIFENITLINADNPIIIDQYYDSYGKSESGALNVSDVTFRGFSGTAAKQKAITLNCCPSGCFDIVLDHVDIVPSTPGKTASCSCNNAHGKSTETVPQCSLSS 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00339 411 Gene3D - 24 410 IPR012334 -
Viun10g00339 411 PANTHER - 34 398 - -
Viun10g00339 411 Pfam Glycosyl hydrolases family 28 64 397 IPR000743 GO:0004650|GO:0005975
Viun10g00339 411 SMART pbh1 198 224 IPR006626 -
Viun10g00339 411 SMART pbh1 278 299 IPR006626 -
Viun10g00339 411 SMART pbh1 307 328 IPR006626 -
Viun10g00339 411 SMART pbh1 175 197 IPR006626 -
Viun10g00339 411 SMART pbh1 225 246 IPR006626 -
Viun10g00339 411 SUPERFAMILY Pectin lyase-like 29 406 IPR011050 -
Viun10g00339 411 ProSitePatterns Polygalacturonase active site. 255 268 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00339 Viun-Chr10 2787612 2792759 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00339 37 402 Glycoside Hydrolase AT5G27530 46.361 9.03e-97 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00339 K01184 - gmx:100782390 455.292